View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20025_high_6 (Length: 447)
Name: NF20025_high_6
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20025_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 49 - 441
Target Start/End: Original strand, 4715869 - 4716261
Alignment:
| Q |
49 |
cctacttaattttgagtaatatgaattccaacctacccttaaaaagaaaagatcaaaagatgaagaattccaactagctaattaacgtacgtttaaaagt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4715869 |
cctacttaattttgagtaatatgaattccaacctacccttaaaaagaaaagatcaaaagatgaagaattccaactagctaattaacgtacgtttaaaagt |
4715968 |
T |
|
| Q |
149 |
taataatttcttatcacgtattcaaatttttatatacatgtattaaacactaaatccaatatttagcactaaatattcgattggatcaaaagtatgtctc |
248 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4715969 |
taataatttcttatcacgtgttcaaatttttatatacatgtattgaacactaaatccaatatttagcactaaatattcgattggatcaaaagtatgtctc |
4716068 |
T |
|
| Q |
249 |
tagatataattaaccttttcaattcaacgtctctaagctcacaatcgagttgtcttttcaattgagcatttatattaccaacttgcatgattagtatttg |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4716069 |
tagatataattaaccttttcaattcaacgtctctaagctcacaatcgagttgtcttttcaattgagcatttatattaccaacttgcatgattagtatttg |
4716168 |
T |
|
| Q |
349 |
tgaggctcttgctagctactttaacaaaactgatccaacatatttataagattaaatttgttttatatgctaattctgattttctattctctc |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4716169 |
tgaggctcttgctagctactttaacaaaactgatccaacatatttataagattaaatttgttttatatgctgattctgattttctattctctc |
4716261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University