View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20025_low_1 (Length: 638)

Name: NF20025_low_1
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20025_low_1
NF20025_low_1
[»] chr1 (12 HSPs)
chr1 (213-618)||(46133905-46134310)
chr1 (21-159)||(46134365-46134503)
chr1 (506-614)||(14924874-14924982)
chr1 (463-536)||(6767583-6767658)
chr1 (463-536)||(36272009-36272084)
chr1 (22-121)||(51988251-51988347)
chr1 (231-306)||(6767452-6767533)
chr1 (231-306)||(36271878-36271959)
chr1 (505-588)||(194086-194169)
chr1 (579-618)||(31390623-31390662)
chr1 (29-62)||(6767145-6767178)
chr1 (29-62)||(36271571-36271604)
[»] chr4 (2 HSPs)
chr4 (506-614)||(10421328-10421436)
chr4 (22-123)||(3848366-3848464)
[»] chr3 (1 HSPs)
chr3 (506-614)||(45500728-45500836)
[»] scaffold0189 (1 HSPs)
scaffold0189 (506-614)||(12390-12499)
[»] scaffold0136 (1 HSPs)
scaffold0136 (22-136)||(21310-21421)
[»] chr2 (4 HSPs)
chr2 (463-536)||(23462916-23462991)
chr2 (231-306)||(23463041-23463122)
chr2 (505-590)||(4479431-4479516)
chr2 (22-113)||(45139855-45139943)
[»] chr5 (1 HSPs)
chr5 (22-107)||(39167244-39167326)


Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 213 - 618
Target Start/End: Complemental strand, 46134310 - 46133905
Alignment:
Q  213 cttgccattaccactgctatgttacattgttacgtaccattttccattctaattgatttttattttgatattgttgaaggaattgaaattcatacacaag 312  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46134310 cttgccattactactgctatgttacattgttatgtaccattttccattctaattgatttttattttgatattgttgaaggaattgaaattcatacacaag 46134211  T
Q  313 tgtagcatcatgggatacagacccaaaatgtcttctccaccactctttctcatctcattgcaacaaactcctctcatttcatcattccttttgttcctat 412  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46134210 tgtagcatcgtggaatacagacccaaaatgtcttctccaccactctttctcatctcattgcaacaaactcctctcatttcatcattccttttattcctat 46134111  T
Q  413 ccgtgatcacctacctcattttcactataacttccttcatcatataaaattttcatcttttattgtttttcataatacccatctcattgtttattttaag 512  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46134110 ccgtaatcacctacctcattttcactataacttccttcatcatataaaattttcatcttttattgtttttcataatacccatctcattgtttattttaag 46134011  T
Q  513 aaatttgtgaaactaaatgatattcaaacaaagacaattcaacttgttatattctggaacaatatccatataaaacttggaactttgaattttccggcag 612  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  | ||||||||||||| |||||||||||||||||||||    
T  46134010 aaatttgtgaaactaaatgatattcgaacaaagacaattcaacttgttatattctggaacagcacccatataaaacttagaactttgaattttccggcag 46133911  T
Q  613 caacca 618  Q
    ||||||    
T  46133910 caacca 46133905  T

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Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 46134503 - 46134365
Alignment:
Q  21 ataacccatttaacaacattcaatccatggcatagaaacccactaagctcctcctctttcctctctagacatttcaattcctgcaattaacaataagatc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46134503 ataacccatttaacaacattcaatccatggcatagaaacccactaagctcctcctctttcctctctagacatttcaattcctgcaattaacaataagatc 46134404  T
Q  121 taggtattcagattcacaggcaagcacaatggaaacaag 159  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46134403 taggtattcagattcacaggcaagcacaatggaaacaag 46134365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 506 - 614
Target Start/End: Complemental strand, 14924982 - 14924874
Alignment:
Q  506 ttttaagaaatttgtgaaactaaatgatattcaaacaaagacaattcaacttgttatattctggaacaatatccatataaaacttggaactttgaatttt 605  Q
    |||||| |||||||||||| ||||||||||| |||||||| |||||||| ||||||| |||| |||||| | ||||||||||||||||||||||| ||||    
T  14924982 ttttaaaaaatttgtgaaattaaatgatattgaaacaaagccaattcaatttgttattttctagaacaacacccatataaaacttggaactttgagtttt 14924883  T
Q  606 ccggcagca 614  Q
    |||||||||    
T  14924882 ccggcagca 14924874  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 463 - 536
Target Start/End: Original strand, 6767583 - 6767658
Alignment:
Q  463 tttcatcttttattgtttttcataatacccatctcat--tgtttattttaagaaatttgtgaaactaaatgatatt 536  Q
    |||||||||||||||||||| | ||||||||||||||  |||||||||||||||| || ||||||| | |||||||    
T  6767583 tttcatcttttattgttttttagaatacccatctcattgtgtttattttaagaaaattatgaaactgattgatatt 6767658  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 463 - 536
Target Start/End: Original strand, 36272009 - 36272084
Alignment:
Q  463 tttcatcttttattgtttttcataatacccatctcat--tgtttattttaagaaatttgtgaaactaaatgatatt 536  Q
    |||||||||||||||||||| | |||||||||||| |  ||||||||||||||||||| ||||||| | |||||||    
T  36272009 tttcatcttttattgttttttagaatacccatctcgttgtgtttattttaagaaatttatgaaactgattgatatt 36272084  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 51988347 - 51988251
Alignment:
Q  22 taacccatttaacaacattcaatccatggcatagaaacccactaagctcctcctctttcctctctagacatttcaattcctgcaattaacaataagatct 121  Q
    ||||||||||||||| |||||||||||||   |||||||||  || ||||||||||| |||| || |||| ||||||||||||||| ||||| |||||||    
T  51988347 taacccatttaacaatattcaatccatgg--aagaaacccaacaaactcctcctcttccctccctggaca-ttcaattcctgcaatcaacaacaagatct 51988251  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 6767452 - 6767533
Alignment:
Q  231 atgttacattgttacgtaccattttccattctaattgattttt------attttgatattgttgaaggaattgaaattcata 306  Q
    |||||||||||||| |||||||||| |||||||||||||| ||      |||||| ||||||||||||||||| ||||||||    
T  6767452 atgttacattgttatgtaccatttttcattctaattgattcttatttagattttgttattgttgaaggaattggaattcata 6767533  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 36271878 - 36271959
Alignment:
Q  231 atgttacattgttacgtaccattttccattctaattgatttttattttga------tattgttgaaggaattgaaattcata 306  Q
    |||||||||||||| |||||||||| |||||||||||||| |||||| ||      ||||||||||||||||| ||||||||    
T  36271878 atgttacattgttatgtaccatttttcattctaattgattcttatttagatttagttattgttgaaggaattggaattcata 36271959  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 588
Target Start/End: Complemental strand, 194169 - 194086
Alignment:
Q  505 attttaagaaatttgtgaaactaaatgatattcaaacaaagacaattcaacttgttatattctggaacaatatccatataaaac 588  Q
    ||||||||||||| |  ||||| |||||||||   |||| |||||||||||||||||| ||||  ||||| | |||||||||||    
T  194169 attttaagaaattcgcaaaactgaatgatattgggacaaggacaattcaacttgttattttctaaaacaacacccatataaaac 194086  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 618
Target Start/End: Original strand, 31390623 - 31390662
Alignment:
Q  579 catataaaacttggaactttgaattttccggcagcaacca 618  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  31390623 catataaaacttggaactttgagttttccggtagcaacca 31390662  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 6767145 - 6767178
Alignment:
Q  29 tttaacaacattcaatccatggcatagaaaccca 62  Q
    |||||||||||||||||||||||| |||||||||    
T  6767145 tttaacaacattcaatccatggcagagaaaccca 6767178  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 36271571 - 36271604
Alignment:
Q  29 tttaacaacattcaatccatggcatagaaaccca 62  Q
    |||||||||||||||||||||||| |||||||||    
T  36271571 tttaacaacattcaatccatggcagagaaaccca 36271604  T

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Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 506 - 614
Target Start/End: Original strand, 10421328 - 10421436
Alignment:
Q  506 ttttaagaaatttgtgaaactaaatgatattcaaacaaagacaattcaacttgttatattctggaacaatatccatataaaacttggaactttgaatttt 605  Q
    ||||||||||||||||||| |||||||||||  ||||||| |||||||| ||||||| |||| |||||| | ||||||||||||||||||||||| ||||    
T  10421328 ttttaagaaatttgtgaaattaaatgatattggaacaaagccaattcaatttgttattttctagaacaacacccatataaaacttggaactttgagtttt 10421427  T
Q  606 ccggcagca 614  Q
    |||||||||    
T  10421428 ccggcagca 10421436  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 3848464 - 3848366
Alignment:
Q  22 taacccatttaacaacattcaatccatggcatagaaacccactaagctcctcctctttcctctctagacatttcaattcctgcaattaacaataagatct 121  Q
    |||||||||||||||||||||||||||||   ||||||| |  || |||||||||||||||| || |||| |||||||| |||||| ||||| |||||||    
T  3848464 taacccatttaacaacattcaatccatgg--aagaaaccaaacaaactcctcctctttcctccctggaca-ttcaattcatgcaatcaacaacaagatct 3848368  T

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Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 506 - 614
Target Start/End: Complemental strand, 45500836 - 45500728
Alignment:
Q  506 ttttaagaaatttgtgaaactaaatgatattcaaacaaagacaattcaacttgttatattctggaacaatatccatataaaacttggaactttgaatttt 605  Q
    ||||||||||||||||||| |||||||||||  ||||||| |||||||| ||||||| |||| |||||| | ||||||||||||||||||||||| ||||    
T  45500836 ttttaagaaatttgtgaaattaaatgatattggaacaaagccaattcaatttgttattttctagaacaacacccatataaaacttggaactttgagtttt 45500737  T
Q  606 ccggcagca 614  Q
    |||||||||    
T  45500736 ccggcagca 45500728  T

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Target: scaffold0189 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 506 - 614
Target Start/End: Complemental strand, 12499 - 12390
Alignment:
Q  506 ttttaagaaatttgtgaaactaaatgatattcaaacaaagacaatt-caacttgttatattctggaacaatatccatataaaacttggaactttgaattt 604  Q
    ||||||||||||||||||| |||||||||||  ||||||| ||||| ||| ||||||| |||| |||||| | ||||||||||||||||||||||| |||    
T  12499 ttttaagaaatttgtgaaattaaatgatattggaacaaagccaatttcaatttgttattttctagaacaacacccatataaaacttggaactttgagttt 12400  T
Q  605 tccggcagca 614  Q
    ||||||||||    
T  12399 tccggcagca 12390  T

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Target: scaffold0136 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 21421 - 21310
Alignment:
Q  22 taacccatttaacaacattcaatccatggcatagaaacccactaagctcctcctctttcctctctagacatttcaattcctgcaattaacaataagatct 121  Q
    |||||||||||||||||||||||||||||   ||||| |||  || |||||||||||||||| || |||| ||||||||||||||||||||| |||||||    
T  21421 taacccatttaacaacattcaatccatgg--aagaaatccaacaaactcctcctctttcctccctggaca-ttcaattcctgcaattaacaacaagatct 21325  T
Q  122 aggtattcagattca 136  Q
    |  || |||||||||    
T  21324 aaatactcagattca 21310  T

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Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 463 - 536
Target Start/End: Complemental strand, 23462991 - 23462916
Alignment:
Q  463 tttcatcttttattgtttttcataatacccatctcat--tgtttattttaagaaatttgtgaaactaaatgatatt 536  Q
    |||||||||||||||||||| | ||||||||||||||  ||||||||||||||||||| ||||||| | |||||||    
T  23462991 tttcatcttttattgttttttagaatacccatctcattgtgtttattttaagaaatttatgaaactgagtgatatt 23462916  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 23463122 - 23463041
Alignment:
Q  231 atgttacattgttacgtaccattttccattctaattgatttttattttga------tattgttgaaggaattgaaattcata 306  Q
    |||||||||||||| |||||||||| |||||||||||||| |||||| ||      ||||||||||||||||| ||||||||    
T  23463122 atgttacattgttatgtaccatttttcattctaattgattcttatttagatttcgttattgttgaaggaattggaattcata 23463041  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 505 - 590
Target Start/End: Original strand, 4479431 - 4479516
Alignment:
Q  505 attttaagaaatttgtgaaactaaatgatattcaaacaaagacaattcaacttgttatattctggaacaatatccatataaaactt 590  Q
    ||||||||||||| |  ||||| |||||||||   |||| |||||||||||||||||| ||||  ||||| | |||||||||||||    
T  4479431 attttaagaaattcgcaaaactgaatgatattgggacaaggacaattcaacttgttattttctaaaacaacacccatataaaactt 4479516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 45139855 - 45139943
Alignment:
Q  22 taacccatttaacaacattcaatccatggcatagaaacccactaagctcctcctctttcctctctagacatttcaattcctgcaattaacaa 113  Q
    ||||||||||||||||||||||| |||||   |||||||||  || || |||||||| |||| | ||||| ||||||||||||||| |||||    
T  45139855 taacccatttaacaacattcaattcatgg--aagaaacccaacaaacttctcctcttccctccccagaca-ttcaattcctgcaatcaacaa 45139943  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 39167326 - 39167244
Alignment:
Q  22 taacccatttaacaacattcaatccatggcatagaaacccactaagctcctcctctttcctctctagacatttcaattcctgcaat 107  Q
    |||||||||||||||||||||||||||||   |||||||||  || ||||||||||| |||| |  |||| |||||||||||||||    
T  39167326 taacccatttaacaacattcaatccatgg--aagaaacccaacaaactcctcctcttccctccccggaca-ttcaattcctgcaat 39167244  T

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