View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20025_low_11 (Length: 348)
Name: NF20025_low_11
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20025_low_11 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 2134184 - 2133837
Alignment:
| Q |
1 |
ttattaggaacaaccagctatggtatcacaagcctaatttcaatgggcattttacttgcaagagttggtttctactccaatttctttcaatggtatgact |
100 |
Q |
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| T |
2134184 |
ttattaggaataaccagctatggtatcacaagcctaatttcaatgggcattttacttgcaagagttggtttctactccaatttctttcaatggtatgact |
2134085 |
T |
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| Q |
101 |
agccttatatacaacatatagacaccagttgaatgataccatatgagctccatgctttcacttttatcttctaacatcctcctagcatcaggtatctcct |
200 |
Q |
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| T |
2134084 |
agccttatatacaacatatagacaccagttgaatgataccatatgagctccatgctttcacttttatcttctaacatcctcctagcatcaggtatctcct |
2133985 |
T |
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| Q |
201 |
tgaaacacactaacccaaacacccttagatgcttcacacttgattttcttccactctatgcttcctcgggtacctttaattttagcttctcggtaataca |
300 |
Q |
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| T |
2133984 |
tgaaacacactaacccaaacacccttagatgcttcacacttgattttcttccactctatgcttcctcgggtacctttaattttagcttctcggtaataca |
2133885 |
T |
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| Q |
301 |
tttgtttagaatataagcagttgcggtgacgacttttctccagaactt |
348 |
Q |
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| T |
2133884 |
tttgtttagaatataagcagttgcggtgacgacttttctccagaactt |
2133837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 2073192 - 2073286
Alignment:
| Q |
1 |
ttattaggaacaaccagctatggtatcacaagcctaatttcaatgggcattttacttgcaagagttggtttctactccaatttctttcaatggta |
95 |
Q |
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| T |
2073192 |
ttattaggaacaaccagctatggtatcacaatcctaatttcaatggacattttacttacaagagttggtttctactccaattactttcaatggta |
2073286 |
T |
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