View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20025_low_12 (Length: 334)
Name: NF20025_low_12
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20025_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 29 - 318
Target Start/End: Complemental strand, 6092923 - 6092635
Alignment:
| Q |
29 |
ctcatgagtagagctatgagaattattaaaaaacatgttatttctttcattccaaattaaccagacacacacaagtcaaagaagctagaggaatgatcgt |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||| |
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| T |
6092923 |
ctcatgagtagagctatgagaattattaaaaaacatgttatttctttcattccaaattaacgagacacacacaagtcaaagaagctggatgaatgatcgt |
6092824 |
T |
|
| Q |
129 |
tgaaccttcaaaccacctaaacaataagtaaaatgaatgaagtgatcacgaagattgtgaggatcaatttatcacgcaggatgataatggattaattcta |
228 |
Q |
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||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
6092823 |
tgagccttcaaaccacctaaacaataagtaaactgaatgaagtgatcacaaagattgtgaggatcaatttatcccgcatgatgataatggattaattcta |
6092724 |
T |
|
| Q |
229 |
agttgcataaacaagattagnnnnnnnatgtgtataaattagttcctattattcgtttaacaaatctcatcattaaattaaataggaaat |
318 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6092723 |
agttgcataaataagattagatttttatagtgtataaattagttcctatta-tcgtttaacaaatctcatcattaaattaaataggaaat |
6092635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 50 - 188
Target Start/End: Original strand, 26196675 - 26196817
Alignment:
| Q |
50 |
attattaaaaaacatgttatttctttcattccaaattaaccag----acacacacaagtcaaagaagctagaggaatgatcgttgaaccttcaaaccacc |
145 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||| |||||| ||| |||||||||| ||||||||||||||| ||||||||||||| |
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| T |
26196675 |
attattaaaagacatgttatttcttttgttccaaattaaccaattaaacacacggaagccaaagaagctggaggaatgatcgttgtgccttcaaaccacc |
26196774 |
T |
|
| Q |
146 |
taaacaataagtaaaatgaatgaagtgatcacgaagattgtga |
188 |
Q |
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| T |
26196775 |
taaacaataagtaaattgtaggaagtgatcacgaagatggtga |
26196817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 15440096 - 15439996
Alignment:
| Q |
48 |
gaattattaaaaaacatgttatttctttcattccaaattaaccagacacacacaagtcaaagaagctagaggaatgatcgttgaaccttcaaaccaccta |
147 |
Q |
| |
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||||||| ||| ||| |||| |||||||||||||| |||||||||| |||| ||| |||||||||| ||||| ||||| | |||||||||| |||| |
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| T |
15440096 |
gaattatgaaataacctgttgtttctttcattccatattaaccagatgcacaaaaggcaaagaagctgaaggaaagatcgacaagccttcaaacctccta |
15439997 |
T |
|
| Q |
148 |
a |
148 |
Q |
| |
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| |
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|
| T |
15439996 |
a |
15439996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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