View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20025_low_14 (Length: 312)
Name: NF20025_low_14
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20025_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 202 - 298
Target Start/End: Original strand, 42209952 - 42210048
Alignment:
| Q |
202 |
gatacaaatatagatatagatgtaatatacatttgaacaccggaaaaaattgtgtataattgaacacaatttggatgtttagttggtagtacttagt |
298 |
Q |
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| T |
42209952 |
gatacaaatatagatatagatgtaatatacatttgaacaccggaaaaaattgtgtataattgaacacaatttggatgtttagttggtagtacttagt |
42210048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 42209808 - 42209908
Alignment:
| Q |
102 |
ttatgtcactacacgagtcaactattacggacaataaatagtctgcatatatttaaaaggttaagacggtttaatcatgtgactaatctttaagtgcatg |
201 |
Q |
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| T |
42209808 |
ttatgtcactatacgagtcaactattacggacaataaatattctgcatatatttaaaaggttaagacggtttaatcatgtgactaatttttaagtgcatg |
42209907 |
T |
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| Q |
202 |
g |
202 |
Q |
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| T |
42209908 |
g |
42209908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 42209671 - 42209764
Alignment:
| Q |
11 |
cataggcgattcaactcttccagactcggatcctcctacggttagggtaattagtttagtttaacttttcttgtttaattataattcaatttta |
104 |
Q |
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| T |
42209671 |
cataagcgattcaactcttccagactcggatcctcctacggttagggtaattagtttagtttaactgttcttgtttaattataattcaatttta |
42209764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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