View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20025_low_17 (Length: 271)

Name: NF20025_low_17
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20025_low_17
NF20025_low_17
[»] chr5 (2 HSPs)
chr5 (144-271)||(4716235-4716363)
chr5 (1-78)||(4716429-4716506)


Alignment Details
Target: chr5 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 4716363 - 4716235
Alignment:
Q  144 aacacctca-attccggcttgttaattacttccaggccgggtttacttatattttatgcccaaagcaatgcctaatcattaattgcagtttaaagataac 242  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4716363 aacacctcatattacggcttgttaattacttccaggccgggtttacttaaattttatgctcaaagcaatgcctaatcattaattgcagtttaaagataac 4716264  T
Q  243 gtgagagaatagaaaatcagaatcagcat 271  Q
    |||||||||||||||||||||||||||||    
T  4716263 gtgagagaatagaaaatcagaatcagcat 4716235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 4716506 - 4716429
Alignment:
Q  1 ttccctataaattctctctcatattcctaaacaaaaggcctctcatattgtatctgataaaatatattgtccatcttg 78  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4716506 ttccctataaattatctctcagattcctaaacaaaaggcctctcatattgtatctgataaaatatattgtccatcttg 4716429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University