View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20025_low_18 (Length: 266)
Name: NF20025_low_18
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20025_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 2134601 - 2134835
Alignment:
| Q |
15 |
agaaaatgaaacacaaaccaaatatacattttggttttaaagaagttttggtcacaagtcaatatcactctcatttactacaatatcaaataatcaaaca |
114 |
Q |
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| T |
2134601 |
agaaaatgaaacacaaaccaaatatacattttggttttaaagaagttttggtcacaagtcaatatcactctcatttactacaatatcaaataatcaaaca |
2134700 |
T |
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| Q |
115 |
ttaattgaaacctatagggaactgaggaaagtctcgaggtctaaccattgagatggatggcgttgtttgcaatatcaaaagctcctttgttgtgttcctt |
214 |
Q |
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| T |
2134701 |
ttaattgaaacctatagggaactgaggaaagtctcgaggtctaaccattgagatggatggcgtagtttgcaatatcagaagctcctttgttgtgttcctt |
2134800 |
T |
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| Q |
215 |
aaacagtagaaaaatacatgttatttgtagaggtt |
249 |
Q |
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| T |
2134801 |
aaacagtagaaaaatacatgttatttgtagaggtt |
2134835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 99 - 239
Target Start/End: Complemental strand, 2083668 - 2083526
Alignment:
| Q |
99 |
atcaaataatcaaacattaattgaaacctatagggaactgaggaaagtct--cgaggtctaaccattgagatggatggcgttgtttgcaatatcaaaagc |
196 |
Q |
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| T |
2083668 |
atcaaagaatcaaacattaattgaaacctataaggaactgagaaaagttttatgaggtctaaccagtgagattgatggcccggtttgcattacgaacagc |
2083569 |
T |
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| Q |
197 |
tcctttgttgtgttccttaaacagtagaaaaatacatgttatt |
239 |
Q |
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| T |
2083568 |
tccatagttacgttccttaaacattaaaaaaatacatgttatt |
2083526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 2066003 - 2065950
Alignment:
| Q |
122 |
aaacctatagggaactgaggaaagtctcgaggtctaaccattgagatggatggc |
175 |
Q |
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| T |
2066003 |
aaaccgataggaaactgagaaaagtcttgaggtctaaccattgagattgatggc |
2065950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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