View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20025_low_2 (Length: 621)
Name: NF20025_low_2
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20025_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 16 - 621
Target Start/End: Original strand, 12560300 - 12560905
Alignment:
| Q |
16 |
atgccaaacaactcaaatgtgacgtaaacagcaagcaatttaaagatgctatgcgatacctttggatgccaaggctagtggagcgcatccaagctgccgc |
115 |
Q |
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| T |
12560300 |
atgccaaacaactcaaatgtgacgtaaacagcaagcaatttaaagatgctatgcgatacctttggatgccaaggctagtggagcgcatccaagctgccgc |
12560399 |
T |
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| Q |
116 |
atccacctccgccaccctagccaccgccactaataatggtttaccaagtggtacaacgacggtcaccaccaacaatacaccatacaacataaacaacaat |
215 |
Q |
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| T |
12560400 |
atccacctccgccaccctagccaccgccactaataatggtttaccaagtggtacaacgacggtcaccaccaacaatacaccatacaacataaacaacaat |
12560499 |
T |
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| Q |
216 |
tttgatgtccatagtggcgcgaacatgttaactccaacaattatgaacaccaacagtttatgtggttcacatgttgcacaaagttataccccggaaaata |
315 |
Q |
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| T |
12560500 |
tttgatgtccatagtgacgcgaacatgttaactccaacaattatgaacaccaacagtttatgtggttcacatgttgcacaaagttataccccggaaaata |
12560599 |
T |
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| Q |
316 |
gtagcaatggcgccgcagcagcatcatcggattcatttgggacacaattttcgcctatctcggaattgactcaagattactacaatgtcccagttggtag |
415 |
Q |
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| T |
12560600 |
gtagcaatggcgccgcagcagcatcatcggattcatttgggacacaagtttcgcctatctcggaattgactcaagattactacaatgtcccagttggtag |
12560699 |
T |
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| Q |
416 |
taacaacaataataaccctaattctgattattaccaacaagctcaacaatttgggttttttgattgcataactagcccatctggattgttccctcaaatg |
515 |
Q |
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| T |
12560700 |
taacaacaataataaccctaattctgattattaccaacaagctcaacaatttgggttttttgattgcataactagcccatctggattgttccctcaaatg |
12560799 |
T |
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| Q |
516 |
gatttcaattccatggaaccaaacactccttggattcaaggggacacatctgacaatttctggaatgttgaaaacatgttgctctttcaacatcccaatg |
615 |
Q |
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| T |
12560800 |
gatttcaattccatggaaccaaacactccttggattcaaggggacacatctgacaatttctggaatgttgaaaacatgttgctctttcaacatcccaatg |
12560899 |
T |
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| Q |
616 |
acaaca |
621 |
Q |
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|||||| |
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| T |
12560900 |
acaaca |
12560905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 50777484 - 50777386
Alignment:
| Q |
17 |
tgccaaacaactcaaatgtgacgtaaacagcaagcaatttaaagatgctatgcgatacctttggatgccaaggctagtggagcgcatccaagctgccgc |
115 |
Q |
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|||||||||||||||||| ||||| || ||||||||||| || || | ||||| ||||||||||||||||||||||| || || || ||||| ||||| |
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| T |
50777484 |
tgccaaacaactcaaatgcgacgtgaatagcaagcaattcaaggacaccatgcgctacctttggatgccaaggctagtcgaacgtattcaagccgccgc |
50777386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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