View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20025_low_25 (Length: 239)
Name: NF20025_low_25
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20025_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38314903 - 38314682
Alignment:
| Q |
1 |
cataagtgagcactttcttcaatattttaggctttttgttgggttccaacgaatctataaccattgaacaattcacaagaacaacaaatttcttaagatg |
100 |
Q |
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| T |
38314903 |
cataagtgagcactttcttcaatattttaggctttttgttgggttccaacgaatctataaccattgaacaattcacacgaacaacaaatttcttaagatg |
38314804 |
T |
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| Q |
101 |
aacaaaatcagcaatcacaagctgaataggaaccttcacctttatcaacaaaggaatatatcccattttttggtctttcaatagttgaagttgcattgta |
200 |
Q |
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| T |
38314803 |
aaaaaaatcagcaatcacaagctgaataggaaccttcaccattatcaacaaaggaatatatcccattttttggtctttcaatagttgaagttgcattgta |
38314704 |
T |
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| Q |
201 |
ggtccaaaatcagcatctccct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
38314703 |
ggtccaaaatcagcatctccct |
38314682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 38130153 - 38130305
Alignment:
| Q |
4 |
aagtgagcactttcttcaatattttaggctttttgttgggttccaacgaatctataaccattgaacaattcacaagaacaacaaatttcttaagatgaac |
103 |
Q |
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|||||| | |||||||||| || |||||| |||||||||||| || ||||||||||| |||||||||| || |||||||||| ||||||||| |
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| T |
38130153 |
aagtgaactctttcttcaaaatcttaggccttttgttgggttgcagttgatctataaccaa--aacaattcaccttaaaaacaaatttcctaagatgaat |
38130250 |
T |
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| Q |
104 |
aaaatcagcaatcacaagctgaataggaaccttcacctttatcaacaaaggaata |
158 |
Q |
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||| ||| ||||||| ||| ||||||||||||||| ||| |||||||||||| |
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| T |
38130251 |
aaagtcatcaatcaccagccttataggaaccttcaccactattaacaaaggaata |
38130305 |
T |
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