View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20025_low_29 (Length: 238)
Name: NF20025_low_29
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20025_low_29 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 14332153 - 14332377
Alignment:
| Q |
16 |
gttattagcac-tgcttcagctgcaatgttgtataagaaaaaacataaggtaaatttatgtagaaaatgcaccacttcacttacaattcattttttctgt |
114 |
Q |
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| T |
14332153 |
gttattagcacatgcttgagctgcaatgttgtataagaaaaaatataaggtaaatttatgtagaaaatgcaccacttcacttacaattcattttttctgt |
14332252 |
T |
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| Q |
115 |
tttcattttaaatcataatcaagaagggtaacatatagtatgttcaagaagcaatctttctaaagtacaggtcatgcaacatggta-tattgggcttaat |
213 |
Q |
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| T |
14332253 |
tttcattttaaaccataatcaagaagggtaacatatagtatgttcaagaagcaatctttctaaagtacaggtcatgcaacatggcattattgggcttaat |
14332352 |
T |
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| Q |
214 |
cttcttacttttggttttgttccac |
238 |
Q |
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| T |
14332353 |
cttcttacttttggttttgttccac |
14332377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 9989120 - 9989344
Alignment:
| Q |
16 |
gttattagcac-tgcttcagctgcaatgttgtataagaaaaaacataaggtaaatttatgtagaaaatgcaccacttcacttacaattcattttttctgt |
114 |
Q |
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| T |
9989120 |
gttattagcacatgcttcagctgcaacgttgtataagaaaaaatataaggtaaatttatgtagaaaatgcaccacttcacttacaattcattttttctgt |
9989219 |
T |
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| Q |
115 |
tttcattttaaatcataatcaagaagggtaacatatagtatgttcaagaagcaatctttctaaagtacaggtcatgcaacatggta-tattgggcttaat |
213 |
Q |
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| T |
9989220 |
tttcattttaaaccataatcaagaagggtaacatatagtatgttcaagaagcaatctttctaaagtacaggtcatgcaacatggcattattgagcttaat |
9989319 |
T |
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| Q |
214 |
cttcttacttttggttttgttccac |
238 |
Q |
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| T |
9989320 |
cttcttacttttggttttgttccac |
9989344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 25327872 - 25327786
Alignment:
| Q |
153 |
tatgttcaagaagcaatctttctaaagtacaggtcatgcaacatgg-tatattgggcttaatcttcttacttttggttttgttccac |
238 |
Q |
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| T |
25327872 |
tatgttcatgaagaaatctttctaaagtgcagggcatgcaacatggatttattgggtttaatcttcttacttttggttttgttccac |
25327786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 25327996 - 25327921
Alignment:
| Q |
27 |
tgcttcagctgcaatgttgtataagaaaaaacataaggta-aatttatgtagaaaatgcaccacttcacttacaat |
101 |
Q |
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| T |
25327996 |
tgcttcagctgcaagattgtataggaagaaatataaggtagaagttatgtagaacatgcaccactttacttacaat |
25327921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 25322005 - 25321953
Alignment:
| Q |
187 |
catgcaacatgg-tatattgggcttaatcttcttacttttggttttgttccac |
238 |
Q |
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| T |
25322005 |
catgcaacatggatttattgggtttaatcttcttacttttggatttgttccac |
25321953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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