View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20025_low_3 (Length: 615)

Name: NF20025_low_3
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20025_low_3
NF20025_low_3
[»] chr2 (12 HSPs)
chr2 (185-354)||(21433556-21433722)
chr2 (233-356)||(26989555-26989678)
chr2 (185-356)||(27152524-27152692)
chr2 (233-356)||(27028374-27028497)
chr2 (233-356)||(27075622-27075745)
chr2 (64-188)||(21435616-21435738)
chr2 (525-601)||(21433461-21433537)
chr2 (525-601)||(26989462-26989538)
chr2 (525-601)||(27028281-27028357)
chr2 (525-601)||(27075762-27075838)
chr2 (3-40)||(39129643-39129680)
chr2 (525-566)||(27152466-27152507)
[»] chr6 (2 HSPs)
chr6 (233-356)||(34691630-34691753)
chr6 (525-601)||(34691537-34691613)
[»] chr4 (1 HSPs)
chr4 (233-356)||(50172854-50172977)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 1e-58; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 185 - 354
Target Start/End: Complemental strand, 21433722 - 21433556
Alignment:
Q  185 actttctgttcccaacaaaagattcagatccttctgcttcataatttcagtccgatcatctcgagaaatcaccttatctttgaagtattccccttgggga 284  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||   |||||||| ||||||||||||||||||||||||||||||| ||| |||||| |||    
T  21433722 actttctgtccccaacacaagattcagatccttctccttcat---ttcagtcccatcatctcgagaaatcaccttatctttgaagaatttcccttgagga 21433626  T
Q  285 tcaagaagacaggccatctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattt 354  Q
    ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21433625 tcaagcagcctggccatctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattt 21433556  T

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Target: chr2; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 233 - 356
Target Start/End: Complemental strand, 26989678 - 26989555
Alignment:
Q  233 agtccgatcatctcgagaaatcaccttatctttgaagtattccccttggggatcaagaagacaggccatctctaatgagtaccgccgatcacccatggtg 332  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| || | ||||||||||||||||||| |||||||||||||||||    
T  26989678 agtcccatcatctcgagaaattaccttatctttgaagtattccccttgaggatcaagcagcctggccatctctaatgagtactgccgatcacccatggtg 26989579  T
Q  333 tagatgtacatttcaaacatttca 356  Q
    ||||||||||||||||||||||||    
T  26989578 tagatgtacatttcaaacatttca 26989555  T

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Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 185 - 356
Target Start/End: Complemental strand, 27152692 - 27152524
Alignment:
Q  185 actttctgttcccaacaaaagattcagatccttctgcttcataatttcagtccgatcatctcgagaaatcaccttatctttgaagtattccccttgggga 284  Q
    ||||| ||| ||||||| || |||||||||||||||||||||   |||||||| |||||||| | |||||||||||||||||||||||||| |||| |||    
T  27152692 actttttgtccccaacacaacattcagatccttctgcttcat---ttcagtcccatcatctcaataaatcaccttatctttgaagtattccacttgagga 27152596  T
Q  285 tcaagaagacaggccatctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacatttca 356  Q
    ||||| ||   ||||||||||| ||| ||| |||||  ||||||||||||||||||||||||||||| ||||    
T  27152595 tcaagcagcttggccatctctagtgaatactgccgaatacccatggtgtagatgtacatttcaaacacttca 27152524  T

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Target: chr2; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 233 - 356
Target Start/End: Complemental strand, 27028497 - 27028374
Alignment:
Q  233 agtccgatcatctcgagaaatcaccttatctttgaagtattccccttggggatcaagaagacaggccatctctaatgagtaccgccgatcacccatggtg 332  Q
    ||||| ||| ||||||||||| |||||||||||||||||   |||||| |||||||| ||   |||||||||||| ||||||||||||||||||||||||    
T  27028497 agtcccatcctctcgagaaattaccttatctttgaagtagagcccttgaggatcaagcagcttggccatctctaacgagtaccgccgatcacccatggtg 27028398  T
Q  333 tagatgtacatttcaaacatttca 356  Q
    ||||||||||||||||||||||||    
T  27028397 tagatgtacatttcaaacatttca 27028374  T

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Target: chr2; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 233 - 356
Target Start/End: Original strand, 27075622 - 27075745
Alignment:
Q  233 agtccgatcatctcgagaaatcaccttatctttgaagtattccccttggggatcaagaagacaggccatctctaatgagtaccgccgatcacccatggtg 332  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||| |||| |||||||| || |  |||||||||||||| ||  |||||||||||||||||    
T  27075622 agtcccatcctctcgagaaattaccttatctttgaagtattcctcttgaggatcaagcagcctagccatctctaatgaatattgccgatcacccatggtg 27075721  T
Q  333 tagatgtacatttcaaacatttca 356  Q
    ||||||||||||||||||||||||    
T  27075722 tagatgtacatttcaaacatttca 27075745  T

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Target: chr2; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 21435738 - 21435616
Alignment:
Q  64 tgccattgattcaattttgttgttgactgtttgaatattgtgtagcacatacattttagattgatagcgtgttcggtgtccatgttaggtattcatgtct 163  Q
    |||||||||||||| |  |||||||||||||||||||||||||| | ||||| |||||| ||||  |||||| || |||||||||||| ||||| |||||    
T  21435738 tgccattgattcaact--gttgttgactgtttgaatattgtgtaccgcatacgttttagtttgaaggcgtgtccgatgtccatgttagatattcctgtct 21435641  T
Q  164 atcactgtttcgtcaactattactt 188  Q
    ||||||||||| |||||| ||||||    
T  21435640 atcactgtttcatcaactgttactt 21435616  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 525 - 601
Target Start/End: Complemental strand, 21433537 - 21433461
Alignment:
Q  525 atgtgcggacgaagggcctcaacttggtcattatttgcatatgctgcaatatgaagagtctaactctagtgatatct 601  Q
    |||||||||| |||||||||||||||| |||| ||||| |||||| ||||| |||||||||| |||| | |||||||    
T  21433537 atgtgcggacaaagggcctcaacttggccattctttgcctatgctccaatacgaagagtctacctctggcgatatct 21433461  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 525 - 601
Target Start/End: Complemental strand, 26989538 - 26989462
Alignment:
Q  525 atgtgcggacgaagggcctcaacttggtcattatttgcatatgctgcaatatgaagagtctaactctagtgatatct 601  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||| ||| |||||||| ||| || ||| |||||||    
T  26989538 atgtgcggacaaagggcctcaacttggtcattacttgcacatgctccaacatgaagaggctacctttagagatatct 26989462  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 525 - 601
Target Start/End: Complemental strand, 27028357 - 27028281
Alignment:
Q  525 atgtgcggacgaagggcctcaacttggtcattatttgcatatgctgcaatatgaagagtctaactctagtgatatct 601  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||| ||| |||||||| ||| || ||| |||||||    
T  27028357 atgtgcggacaaagggcctcaacttggtcattacttgcacatgctccaacatgaagaggctacctttagagatatct 27028281  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 525 - 601
Target Start/End: Original strand, 27075762 - 27075838
Alignment:
Q  525 atgtgcggacgaagggcctcaacttggtcattatttgcatatgctgcaatatgaagagtctaactctagtgatatct 601  Q
    |||||||||| |||||||||||||||||||||| ||||||||||  ||| |||||||| ||| || ||| |||||||    
T  27075762 atgtgcggacaaagggcctcaacttggtcattacttgcatatgcgccaacatgaagaggctacctttagagatatct 27075838  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 39129643 - 39129680
Alignment:
Q  3 aaagcaagcacaactttgtttgatggacgacttgattg 40  Q
    |||||||||||||||||||||||||||| |||||||||    
T  39129643 aaagcaagcacaactttgtttgatggacaacttgattg 39129680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 566
Target Start/End: Complemental strand, 27152507 - 27152466
Alignment:
Q  525 atgtgcggacgaagggcctcaacttggtcattatttgcatat 566  Q
    |||| ||||||||||||||||||||| ||||| |||||||||    
T  27152507 atgtacggacgaagggcctcaacttgttcattctttgcatat 27152466  T

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Target: chr6 (Bit Score: 96; Significance: 9e-47; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 233 - 356
Target Start/End: Complemental strand, 34691753 - 34691630
Alignment:
Q  233 agtccgatcatctcgagaaatcaccttatctttgaagtattccccttggggatcaagaagacaggccatctctaatgagtaccgccgatcacccatggtg 332  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| || | ||||||||||||||||||| |||||||||||||||||    
T  34691753 agtcccatcatctcgagaaattaccttatctttgaagtattccccttgaggatcaagcagcctggccatctctaatgagtactgccgatcacccatggtg 34691654  T
Q  333 tagatgtacatttcaaacatttca 356  Q
    ||||||||||||||||||||||||    
T  34691653 tagatgtacatttcaaacatttca 34691630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 525 - 601
Target Start/End: Complemental strand, 34691613 - 34691537
Alignment:
Q  525 atgtgcggacgaagggcctcaacttggtcattatttgcatatgctgcaatatgaagagtctaactctagtgatatct 601  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||| ||| |||||||| ||| || ||| |||||||    
T  34691613 atgtgcggacaaagggcctcaacttggtcattacttgcacatgctccaacatgaagaggctacctttagagatatct 34691537  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 233 - 356
Target Start/End: Original strand, 50172854 - 50172977
Alignment:
Q  233 agtccgatcatctcgagaaatcaccttatctttgaagtattccccttggggatcaagaagacaggccatctctaatgagtaccgccgatcacccatggtg 332  Q
    ||||| |||||||||||||||||| |||   ||||||||||| ||||| |||||||| ||   ||||||||| ||||  ||  ||| |||||||||||||    
T  50172854 agtcccatcatctcgagaaatcactttagaattgaagtattctccttgaggatcaagcagcttggccatctccaatgcatagggcctatcacccatggtg 50172953  T
Q  333 tagatgtacatttcaaacatttca 356  Q
    ||||||||||| ||||||||||||    
T  50172954 tagatgtacatctcaaacatttca 50172977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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