View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20025_low_30 (Length: 238)
Name: NF20025_low_30
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20025_low_30 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 92 - 238
Target Start/End: Complemental strand, 12561063 - 12560917
Alignment:
| Q |
92 |
cgtaattcacattttcttctttgttcttatattccttaatttaaaatctacatgtgtgtcctacatatgaatttattatatttgctcatttttctacttc |
191 |
Q |
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| T |
12561063 |
cgtaattcacattttcttctttgttcttatattccttaatttaaaatctacatgtgtgtcctacatatgaatttattatatttgctcatttttctacttc |
12560964 |
T |
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| Q |
192 |
tattattttatcatctgtaatatatatttcataataactccttttcc |
238 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12560963 |
tattattttatcatctgtaatatatatttcattataactccttttcc |
12560917 |
T |
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