View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20025_low_31 (Length: 237)
Name: NF20025_low_31
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20025_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3211249 - 3211032
Alignment:
| Q |
1 |
ttaatgatctcaacacctacctaaattgattttcagacacaatattcctctcatcaatcaaacaacatggtagctagtctagtcaaagttgaagtcatca |
100 |
Q |
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| T |
3211249 |
ttaatgatctcaacacctacctaaattgattttcagacacaatattcctctcatcaatcaaacaacatggtagctagtctagtcaaagttgaagtcatca |
3211150 |
T |
|
| Q |
101 |
agctaattataagcttgttacttgtgcataaacaaacctaagcatatgttgttgctaataacatacatggcttacaatatgagttacaacatacctgata |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3211149 |
agctaat---aagcttgttacttgtgcataaacaaacctaagcatatgttgttgctaataacatacatggcttacaatatgagttacaacatacctgata |
3211053 |
T |
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| Q |
201 |
tagatggaggactttcaaatc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
3211052 |
tagatggaggactttcaaatc |
3211032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3195244 - 3195027
Alignment:
| Q |
1 |
ttaatgatctcaacacctacctaaattgattttcagacacaatattcctctcatcaatcaaacaacatggtagctagtctagtcaaagttgaagtcatca |
100 |
Q |
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||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3195244 |
ttaatgatctcaagacatacctaaattgatattcagacacaatattcctctcatcaatcaaacaacatggtagctagtctagtcaaagttgaagtcatca |
3195145 |
T |
|
| Q |
101 |
agctaattataagcttgttacttgtgcataaacaaacctaagcatatgttgttgctaataacatacatggcttacaatatgagttacaacatacctgata |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3195144 |
agctaat---aagcttgttacttgtgcataaacaaacctaagcatatgttgttgctaataacatacatggcttacaatatgagttacaacatacctgata |
3195048 |
T |
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| Q |
201 |
tagatggaggactttcaaatc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
3195047 |
tagatggaggactttcaaatc |
3195027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 3218746 - 3218676
Alignment:
| Q |
11 |
caacacctacctaaattgattttcagacacaatattcctctcatcaatcaaacaacatggtagctagtcta |
81 |
Q |
| |
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||||||||||||||||| || ||||| | |||| |||||||||||||||||||||||||||||||| |||| |
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| T |
3218746 |
caacacctacctaaatttatattcagcctcaatgttcctctcatcaatcaaacaacatggtagctattcta |
3218676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 3205256 - 3205299
Alignment:
| Q |
178 |
tatgagttacaacatacctgatatagatggaggactttcaaatc |
221 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
3205256 |
tatgagttaaagcatacctgatatagatggaggactttcaaatc |
3205299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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