View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20025_low_4 (Length: 608)

Name: NF20025_low_4
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20025_low_4
NF20025_low_4
[»] chr7 (3 HSPs)
chr7 (12-590)||(49041172-49041750)
chr7 (394-468)||(31333842-31333916)
chr7 (73-231)||(49039743-49039901)
[»] chr1 (3 HSPs)
chr1 (406-581)||(15239448-15239623)
chr1 (406-581)||(34053147-34053322)
chr1 (390-486)||(50087288-50087384)
[»] chr2 (1 HSPs)
chr2 (394-468)||(23499272-23499346)
[»] chr5 (1 HSPs)
chr5 (389-485)||(23271550-23271646)
[»] chr4 (2 HSPs)
chr4 (394-468)||(26453318-26453392)
chr4 (391-459)||(46572635-46572703)


Alignment Details
Target: chr7 (Bit Score: 575; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 12 - 590
Target Start/End: Complemental strand, 49041750 - 49041172
Alignment:
Q  12 gagcacagagaatttaaccctcaattggtactttggaaatgatcgttcaatgcttctttctaattgcattttccgaatgggtggcgccgccatacttctt 111  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49041750 gagcaccgagaatttaaccctcaattggtactttggaaatgatcgttcaatgcttctttctaattgcattttccgaatgggtggcgccgccatacttctt 49041651  T
Q  112 tccaataagtcctctgatcgaacccgttccaaatacaagcttgttcatacagttcgaacccataaaggagctgatgacaagaactataactgtgtttacc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49041650 tccaataagtcctctgatcgaacccgttccaaatacaagcttgttcatacagttcgaacccataaaggagctgatgacaagaactataactgtgtttacc 49041551  T
Q  212 agaaagaagatgagacagggaaagttggtgtttcattggctagagaattaatggctgttgcaggagatgctttgaaaacaaacataacaacgttgggtcc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49041550 agaaagaagatgagacagggaaagttggtgtttcattggctagagaattaatggctgttgcaggagatgctttgaaaacaaacataacaacgttgggtcc 49041451  T
Q  312 attggttttgccattttctgaacagttgatgttttttgtttctttggttagaaggaagttgctgaaaggttcaggtgtgaaaccttatataccagatttc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49041450 attggttttgccattttctgaacagttgatgttttttgtttctttggttagaaggaagttgctgaaaggttcaggtgtgaaaccttatataccagatttc 49041351  T
Q  412 aaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaactcagtgagtggcatatggaaccgt 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49041350 aaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaactcagtgagtggcatatggaaccgt 49041251  T
Q  512 ctcggatgactctgcatagatttggaaacacttcaagcagttctctatggtatgaactggcttatactgaggcaaaggg 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49041250 ctcggatgactctgcatagatttggaaacacttcaagcagttctctatggtatgaactggcttatactgaggcaaaggg 49041172  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 394 - 468
Target Start/End: Original strand, 31333842 - 31333916
Alignment:
Q  394 ccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgag 468  Q
    |||||||| || ||||||||  ||||||| ||||||||||| |||||||| ||||||||||||||| | ||||||    
T  31333842 ccttatattcctgatttcaagctagctttcgaacatttctgcattcatgccggtggaagagctgttttagatgag 31333916  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 231
Target Start/End: Original strand, 49039743 - 49039901
Alignment:
Q  73 aattgcattttccgaatgggtggcgccgccatacttctttccaataagtcctctgatcgaacccgttccaaatacaagcttgttcatacagttcgaaccc 172  Q
    ||||| |||||||||||||| || || ||| ||||||| |||||||| |||| |||| | ||||  ||||| |||||| |  ||||||  |||||||| |    
T  49039743 aattgtattttccgaatgggaggagctgccgtacttctctccaataaatcctttgataggacccaatccaagtacaagttacttcatagcgttcgaactc 49039842  T
Q  173 ataaaggagctgatgacaagaactataactgtgtttaccagaaagaagatgagacaggg 231  Q
    ||  ||||||  ||||||||| ||| || ||||| | ||| ||||| || || ||||||    
T  49039843 attcaggagccaatgacaagagctacaattgtgtgttccaaaaagaggacgaaacaggg 49039901  T

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Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 406 - 581
Target Start/End: Original strand, 15239448 - 15239623
Alignment:
Q  406 gatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaactcagtgagtggcatatgg 505  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| | ||||||||| |||| |||||| |  | ||||| ||||||||||    
T  15239448 gattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgagttggagaaaaatcttgatttaagtgattggcatatgg 15239547  T
Q  506 aaccgtctcggatgactctgcatagatttggaaacacttcaagcagttctctatggtatgaactggcttatactga 581  Q
    |||| ||  ||||||| ||| |||||||||| |||||||| || |||||  | ||||||||| |||||||||||||    
T  15239548 aaccatcaaggatgacactgaatagatttggtaacacttctagtagttcattgtggtatgaattggcttatactga 15239623  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 406 - 581
Target Start/End: Original strand, 34053147 - 34053322
Alignment:
Q  406 gatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaactcagtgagtggcatatgg 505  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| | ||||| ||  |||| |||||| | || ||||| ||||||||||    
T  34053147 gattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagagaaaaatcttgaccttagtgattggcatatgg 34053246  T
Q  506 aaccgtctcggatgactctgcatagatttggaaacacttcaagcagttctctatggtatgaactggcttatactga 581  Q
    |||| ||  | ||||| ||  |||||||||| || ||||| || |||||  ||||||||||| |||||||||||||    
T  34053247 aaccatcaagaatgacactaaatagatttggtaatacttctagtagttcattatggtatgaattggcttatactga 34053322  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 390 - 486
Target Start/End: Complemental strand, 50087384 - 50087288
Alignment:
Q  390 gaaaccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaa 486  Q
    |||||| |||||||| ||||| |||  ||||||||||||||| ||||| |||||||||||  | |||||  |||||||||| || ||||||||||||    
T  50087384 gaaaccatatatacctgattttaaacaagcttttgaacatttttgtatacatgctggtggtcgtgctgtgattgatgagttacaaaagaatcttcaa 50087288  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 394 - 468
Target Start/End: Complemental strand, 23499346 - 23499272
Alignment:
Q  394 ccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgag 468  Q
    |||||||| |||||||||||  ||||||| ||||||||||| |||||||| ||||||||||||||| | ||||||    
T  23499346 ccttatattccagatttcaagctagctttcgaacatttctgcattcatgccggtggaagagctgttttagatgag 23499272  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 485
Target Start/End: Complemental strand, 23271646 - 23271550
Alignment:
Q  389 tgaaaccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttca 485  Q
    |||| |||||||| || |||||||||  ||| ||||| ||||| |||||||||||||||||| | || ||  | |||||||| ||||||||||||||    
T  23271646 tgaagccttatattcctgatttcaaacaagcgtttgagcatttttgtattcatgctggtggacgtgccgtgatcgatgagttacagaagaatcttca 23271550  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 468
Target Start/End: Original strand, 26453318 - 26453392
Alignment:
Q  394 ccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgag 468  Q
    ||||||||||| ||||| ||  | |||||||| ||||| ||||||||||||||||| ||||||||  ||||||||    
T  26453318 ccttatatacctgattttaagcttgcttttgagcatttttgtattcatgctggtggtagagctgtgattgatgag 26453392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 459
Target Start/End: Original strand, 46572635 - 46572703
Alignment:
Q  391 aaaccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgtt 459  Q
    ||||||||||| || ||||||||  |||||||||||||||| || || ||||| || || |||||||||    
T  46572635 aaaccttatattcctgatttcaagctagcttttgaacatttttgcatccatgccggaggtagagctgtt 46572703  T

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