View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20025_low_5 (Length: 564)

Name: NF20025_low_5
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20025_low_5
NF20025_low_5
[»] chr3 (4 HSPs)
chr3 (13-545)||(21121470-21122003)
chr3 (158-251)||(52259208-52259301)
chr3 (13-81)||(21114508-21114576)
chr3 (170-256)||(42314050-42314135)
[»] chr7 (7 HSPs)
chr7 (158-256)||(19531772-19531870)
chr7 (210-254)||(23719059-23719103)
chr7 (187-255)||(36478662-36478730)
chr7 (182-256)||(48030251-48030325)
chr7 (210-256)||(13141445-13141491)
chr7 (182-251)||(29892866-29892935)
chr7 (158-250)||(30861976-30862068)
[»] chr2 (6 HSPs)
chr2 (158-258)||(30977514-30977614)
chr2 (171-257)||(26855221-26855307)
chr2 (204-257)||(3389319-3389372)
chr2 (180-254)||(31606281-31606355)
chr2 (217-256)||(27494919-27494958)
chr2 (272-354)||(31642876-31642958)
[»] chr6 (2 HSPs)
chr6 (171-257)||(34631264-34631350)
chr6 (275-327)||(21813917-21813969)
[»] scaffold0533 (1 HSPs)
scaffold0533 (213-265)||(3184-3235)
[»] chr4 (4 HSPs)
chr4 (210-249)||(9791966-9792005)
chr4 (158-246)||(21120133-21120221)
chr4 (188-258)||(37090537-37090607)
chr4 (182-251)||(8525631-8525700)
[»] chr1 (4 HSPs)
chr1 (213-256)||(2752448-2752491)
chr1 (158-266)||(38639311-38639419)
chr1 (170-256)||(328422-328507)
chr1 (163-247)||(897264-897347)
[»] chr8 (1 HSPs)
chr8 (182-251)||(45218435-45218504)
[»] chr5 (4 HSPs)
chr5 (182-251)||(14811220-14811289)
chr5 (137-231)||(4523928-4524022)
chr5 (198-251)||(18615744-18615797)
chr5 (271-327)||(4524057-4524113)
[»] scaffold0285 (1 HSPs)
scaffold0285 (210-251)||(13187-13228)


Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 13 - 545
Target Start/End: Complemental strand, 21122003 - 21121470
Alignment:
Q  13 aatatttgccatcaagtaaaggcaacctgataatataatcatgtgcacaaaccagtcaaagatctatcaaagatggaatactcctgtctccaattataag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21122003 aatatttgccatcaagtaaaggcaacctgataatataatcatgtgcacaaaccagtcaaagatctatcaaagatggaatactcctgtctccaattataag 21121904  T
Q  113 ataatttacaaaaagttttgtcgataaatataagacactctatagatttctagatatatttattacgcattttccaaatatgccccttattattaccatc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21121903 ataatttacaaaaagttttgtcgataaatataagacactctatagatttctagatatatttattacgcattttccaaatatgccccttattattaccatc 21121804  T
Q  213 aatttatcttgaaatatgaaaaattaacattaaatatatctatacaaaaatgaccgacaatttagtaatattcacacacacatgagacaaatttattact 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21121803 aatttatcttgaaatatgaaaaattaacattaaatatatctatacaaaaatgaccgacaatttagtaatattcacacacacatgagacaaatttattact 21121704  T
Q  313 ccgacattttttcttttaacattcgtgatttttgttacaggagacccagggagtatatgattaagtcacatatatcatatgtctaatactacgggagaat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21121703 ccgacattttttcttttaacattcgtgatttttgttacaggagacccagggagtatatgattaagtcacatatatcatatgtctaatactacgggagaat 21121604  T
Q  413 aaactattttgggattgttgaaaaatgtcaaaatgccaaatttttgtttgtacac-nnnnnnnngaacaatttttgtttgtacacttaaaggcatcaact 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  21121603 aaactattttgggattgttgaaaaatgtcaaaatgccaaatttttgtttgtacactttttttttgaacaatttttgtttgtacacttaaaggcatcaact 21121504  T
Q  512 ataaaatttaagcagcagattagaacatagatat 545  Q
    ||||||||||||||||||||||||||||||||||    
T  21121503 ataaaatttaagcagcagattagaacatagatat 21121470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 52259208 - 52259301
Alignment:
Q  158 atttctagatatatttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatat 251  Q
    ||||||||||  ||||||||| | |||||| | ||| |||||||||| ||| |||| | ||||||| ||||||| |  ||||||||||||||||    
T  52259208 atttctagatgcatttattactctttttcccagtataccccttattaatactatcattgtatcttggaatatgataggttaacattaaatatat 52259301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 21114576 - 21114508
Alignment:
Q  13 aatatttgccatcaagtaaaggcaacctgataatataatcatgtgcacaaaccagtcaaagatctatca 81  Q
    ||||||||||||||| ||||| ||||||||||| | |||| ||| ||||||  ||||||||||| ||||    
T  21114576 aatatttgccatcaaataaagacaacctgataacagaatcgtgtacacaaattagtcaaagatccatca 21114508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 42314050 - 42314135
Alignment:
Q  170 atttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctata 256  Q
    ||||||||| | |||||||||||  ||||| |||| ||  |||||| || ||||||||||| ||| |||||||||||||| ||||||    
T  42314050 atttattactctttttccaaatacacccctcattaatattatcaatataccttgaaatatg-aaagttaacattaaatatctctata 42314135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 158 - 256
Target Start/End: Original strand, 19531772 - 19531870
Alignment:
Q  158 atttctagatatatttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctata 256  Q
    |||| |||||| ||||||||| | ||||||||| || |||||||||| |||||||||| ||||||||||||||||||  || ||||||||| |||||||    
T  19531772 atttttagatacatttattactctttttccaaacataccccttattagtaccatcaatgtatcttgaaatatgaaaagatagcattaaatacatctata 19531870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 23719059 - 23719103
Alignment:
Q  210 atcaatttatcttgaaatatgaaaaattaacattaaatatatcta 254  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||    
T  23719059 atcaatatatattgaaatatgaaaaattaacattaaatatatcta 23719103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 36478730 - 36478662
Alignment:
Q  187 caaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctat 255  Q
    ||||||| | |||||||| ||  ||| || |||||||||||||||||| ||||||||||||||||||||    
T  36478730 caaatatactccttattaatattatcgatatatcttgaaatatgaaaagttaacattaaatatatctat 36478662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 48030251 - 48030325
Alignment:
Q  182 ttttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctata 256  Q
    |||| |||||||  ||||||||| ||| |  ||||||||||| |||||||||| |||||||| ||||||||||||    
T  48030251 tttttcaaatatatcccttattaatactacaaatttatcttggaatatgaaaagttaacattgaatatatctata 48030325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 13141491 - 13141445
Alignment:
Q  210 atcaatttatcttgaaatatgaaaaattaacattaaatatatctata 256  Q
    |||||| || ||||||||||||||| |||||||||||||| ||||||    
T  13141491 atcaatataccttgaaatatgaaaagttaacattaaatatctctata 13141445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 29892935 - 29892866
Alignment:
Q  182 ttttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatat 251  Q
    |||| ||||||| |||||||||| ||| | |||||| | |||  ||||||||| ||||||||||||||||    
T  29892935 tttttcaaatataccccttattaatactaccaatttgttttggtatatgaaaagttaacattaaatatat 29892866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 30862068 - 30861976
Alignment:
Q  158 atttctagatatatttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatata 250  Q
    ||||||||||| ||||||||| | ||||| |||||  || ||||||| ||  | |||||| | |||  ||||||||||||| |||||||||||    
T  30862068 atttctagatacatttattactctttttcaaaatacacctcttattaatattaccaatttgttttggtatatgaaaaattatcattaaatata 30861976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 158 - 258
Target Start/End: Original strand, 30977514 - 30977614
Alignment:
Q  158 atttctagatatatttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctatac 257  Q
    |||||||||| |||||||||| | |||||||| ||| ||  | |||| ||| ||||||||||||||||||| ||||| |||| |||||||||||||||||    
T  30977514 atttctagatgtatttattactccttttccaactataccattgattaatactatcaatttatcttgaaatacgaaaagttaatattaaatatatctatac 30977613  T
Q  258 a 258  Q
    |    
T  30977614 a 30977614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 26855221 - 26855307
Alignment:
Q  171 tttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctatac 257  Q
    |||||||| | | ||||| ||||||||||||||| | | |||||| ||||||| |||||||||| |||||||| |||||||||||||    
T  26855221 tttattactcttattccacatatgccccttattaattctatcaatgtatcttggaatatgaaaagttaacattgaatatatctatac 26855307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 3389372 - 3389319
Alignment:
Q  204 attaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctatac 257  Q
    ||||| |||||| ||||||||||||||||||| |||||||||||||||||||||    
T  3389372 attactatcaatgtatcttgaaatatgaaaaactaacattaaatatatctatac 3389319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 31606355 - 31606281
Alignment:
Q  180 cattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatcta 254  Q
    ||||||||| | ||| | ||||||| ||| ||||||||||| |||||| ||||| ||||||||||||||||||||    
T  31606355 cattttccacacatgtctcttattaatactatcaatttatcatgaaatgtgaaatattaacattaaatatatcta 31606281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 27494958 - 27494919
Alignment:
Q  217 tatcttgaaatatgaaaaattaacattaaatatatctata 256  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  27494958 tatcttgaaatatgaaaaattaacattaaatatatttata 27494919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 31642876 - 31642958
Alignment:
Q  272 atttagtaatattcacacacacatgagacaaatttattactccgacattttttcttttaacattcgtgatttttgttacagga 354  Q
    |||| |||||| ||||||| |  |||||||||| ||||||||| |||  |||||| |||| | ||||||||||||||| ||||    
T  31642876 atttggtaatagtcacacatatttgagacaaatgtattactccaacaacttttctcttaatactcgtgatttttgttaaagga 31642958  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 34631264 - 34631350
Alignment:
Q  171 tttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctatac 257  Q
    |||||||| | | ||||| ||||||||||||||| | | |||||| ||||||| |||||||||| |||||||| |||||||||||||    
T  34631264 tttattactcttattccacatatgccccttattaattctatcaatgtatcttggaatatgaaaacttaacattgaatatatctatac 34631350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 21813969 - 21813917
Alignment:
Q  275 tagtaatattcacacacacatgagacaaatttattactccgacattttttctt 327  Q
    |||||||| |||||||||  |||||||||||||||||||| |||  |||||||    
T  21813969 tagtaataatcacacacatttgagacaaatttattactccaacaacttttctt 21813917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 3235 - 3184
Alignment:
Q  213 aatttatcttgaaatatgaaaaattaacattaaatatatctatacaaaaatga 265  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||| ||||||    
T  3235 aatttatcttgaaatatgaaaaa-taacattaaatatatttatacacaaatga 3184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 9791966 - 9792005
Alignment:
Q  210 atcaatttatcttgaaatatgaaaaattaacattaaatat 249  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  9791966 atcaatatatcttgaaatatgaaaaattaacattaaatat 9792005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 21120133 - 21120221
Alignment:
Q  158 atttctagatatatttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaa 246  Q
    |||||||||| |||| ||||| | |||||||||||| |||||||||| ||| |  ||||| |||||| |||| |||| |||| ||||||    
T  21120133 atttctagatgtattgattactctttttccaaatataccccttattaatactaataatttgtcttgatatatcaaaagttaatattaaa 21120221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 37090607 - 37090537
Alignment:
Q  188 aaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctataca 258  Q
    |||||| |||||||||| |||  ||||| |||||| |||||| |||| |||| ||||||||||| ||||||    
T  37090607 aaatataccccttattaatactttcaatgtatcttaaaatataaaaatttaatattaaatatatttataca 37090537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 8525631 - 8525700
Alignment:
Q  182 ttttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatat 251  Q
    |||| ||||||| |||||||||| ||| |||||||| |||||  ||||||||| |||  |||||||||||    
T  8525631 ttttgcaaatataccccttattaatactatcaatttgtcttggtatatgaaaagttagaattaaatatat 8525700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 2752491 - 2752448
Alignment:
Q  213 aatttatcttgaaatatgaaaaattaacattaaatatatctata 256  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||    
T  2752491 aatttatcttgaaatataaaaaattaacattgaatatatctata 2752448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 266
Target Start/End: Complemental strand, 38639419 - 38639311
Alignment:
Q  158 atttctagatatatttattacgcattttccaaatatgccccttattattaccatcaattta-tcttgaaatatgaaaaattaacattaaatatatctata 256  Q
    |||||||||| ||||||| || | ||||  ||| || |||||||||| ||| |||||| || | |||| ||||||||| |||||||||||| ||||||||    
T  38639419 atttctagatgtatttatcactcttttttaaaa-ataccccttattaatactatcaatataattttgagatatgaaaagttaacattaaatgtatctata 38639321  T
Q  257 caaaaatgac 266  Q
    || |||||||    
T  38639320 cacaaatgac 38639311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 256
Target Start/End: Complemental strand, 328507 - 328422
Alignment:
Q  170 atttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctata 256  Q
    ||||||||| | |||||||||||  ||||| |||| ||  |||||| || ||||||||||| ||| |||||||||||||| ||||||    
T  328507 atttattactctttttccaaatacacccctcattaatattatcaatataccttgaaatatg-aaagttaacattaaatatctctata 328422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 897347 - 897264
Alignment:
Q  163 tagatatatttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaat 247  Q
    ||||| |||||||||| | |||||||||||  ||  |||||| ||| ||| |||||||||| |||||| |||| |||||||||||    
T  897347 tagatttatttattactctttttccaaatacaccatttattaatactatctatttatcttggaatatg-aaaagtaacattaaat 897264  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 45218435 - 45218504
Alignment:
Q  182 ttttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatat 251  Q
    |||||||||||| |||||||||| ||  | |||||| |||||  ||||||||| ||||||||||||||||    
T  45218435 ttttccaaatataccccttattaatattaccaatttgtcttggtatatgaaaagttaacattaaatatat 45218504  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 14811220 - 14811289
Alignment:
Q  182 ttttccaaatatgccccttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatat 251  Q
    |||| ||||| | |||||||||| ||| |||||||| |||||| |||||||||||||  |||||||||||    
T  14811220 tttttcaaatttaccccttattaatactatcaatttgtcttgatatatgaaaaattattattaaatatat 14811289  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 4523928 - 4524022
Alignment:
Q  137 taaatataagacactctatagatttctagatatatttattacgcattttccaaatatgccccttattattaccatcaatttatcttgaaatatga 231  Q
    |||||||||||| | ||| | ||| ||||||  |||||| || | |||||||| ||| |||||||||| ||||||| | |||||||| |||||||    
T  4523928 taaatataagactcgctacaaattactagatgcatttatcactctttttccaattataccccttattaataccatctaattatcttggaatatga 4524022  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 18615797 - 18615744
Alignment:
Q  198 cttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatat 251  Q
    ||||||| ||| |||||||| ||| || ||||||||| ||||||||||||||||    
T  18615797 cttattaatactatcaatttgtctcgagatatgaaaagttaacattaaatatat 18615744  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 4524057 - 4524113
Alignment:
Q  271 aatttagtaatattcacacacacatgagacaaatttattactccgacattttttctt 327  Q
    |||||||||||| |||||||||  | |||||||||||||||||| |||  |||||||    
T  4524057 aatttagtaatagtcacacacatttcagacaaatttattactccaacaacttttctt 4524113  T

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Target: scaffold0285 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 13187 - 13228
Alignment:
Q  210 atcaatttatcttgaaatatgaaaaattaacattaaatatat 251  Q
    |||||| |||||||||||||||||| |||||||| |||||||    
T  13187 atcaatgtatcttgaaatatgaaaagttaacattgaatatat 13228  T

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