View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20025_low_6 (Length: 552)
Name: NF20025_low_6
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20025_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 3642964 - 3642771
Alignment:
| Q |
13 |
caaaggaggaggggttactctgtgtgtatgttgagccctaaccctaaaaatgtgagaatgtgtatttatatatggtaaacttgatcagctcaa-taaata |
111 |
Q |
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| T |
3642964 |
caaaggaggaggggttactctgtgtgtgtgttgagccctaaccctaaaaatgtgagaatgtgtatttatatacggtaaacttgatcagctcaaataaata |
3642865 |
T |
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| Q |
112 |
ttaaagttttgataaataagtggagccaggtcataatcacttttcatacaaaaaagatcataatcacttttcctacaaaaaagctcataatcac |
205 |
Q |
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| T |
3642864 |
ttaaagttttgataaataagtggaggcaggtcataatcacttttcatacaaaaaagatcataatcacttttcctacaaaaaagctcataatcac |
3642771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 314 - 535
Target Start/End: Complemental strand, 3642676 - 3642455
Alignment:
| Q |
314 |
aaaattaaatgaactgtcatacatttaattgtactaactgaaaatcatagttaattttacacacacnnnnnnngcaattatactcggtagcnnnnnnngt |
413 |
Q |
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| T |
3642676 |
aaaattatatgaactgtcatacatttaattgtactaactgaaaatcatagttaattttacacacacaaaaaaagcaattatactcggtagcaaaaaaagt |
3642577 |
T |
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| Q |
414 |
aattatatttattactattttgctcattaattctcatatgttagccacgaaatcttccttatatttttcaagagttgttttgaaaaaattaaaagacaat |
513 |
Q |
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| T |
3642576 |
aattatatttattaccattttactcattaattctcatatgttagccacgaaatcttccttatatttttcaagagttgttttgaaaaaattaaaagacaat |
3642477 |
T |
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| Q |
514 |
atgagctatatgagttccttta |
535 |
Q |
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| T |
3642476 |
atgagctatatgagttccttta |
3642455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 3642807 - 3642768
Alignment:
| Q |
142 |
tcataatcacttttcatacaaaaaagatcataatcacttt |
181 |
Q |
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| T |
3642807 |
tcataatcacttttcctacaaaaaagctcataatcacttt |
3642768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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