View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20025_low_8 (Length: 395)
Name: NF20025_low_8
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20025_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 55239963 - 55240329
Alignment:
| Q |
18 |
agaaatgcagagtcttaaatttggtggtaacgcatttaatttaatttgccaacgaccctgcaaataataggaggacacattaaattttgacaattggaga |
117 |
Q |
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| T |
55239963 |
agaaatgcagagtcttaaatttggtggtaacgcatttaatttaatttgccaacgaccctgcaaataataggaggacacattaaattttgacaattggaga |
55240062 |
T |
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| Q |
118 |
aaggcatattttttgaattacttacacaacaaaggaagaaagaaagttgagtctatacatatttattaggagttcagatggatgggtaagttggtctgct |
217 |
Q |
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| T |
55240063 |
aaggcatattttttgaattacttacacaacaaaggaagaaagaaagttgagtctatacatatttattaggagttcagatggatgggtaagttggtctgct |
55240162 |
T |
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| Q |
218 |
gccactgccaacctcacttgaaattcaaataggaattggcttttgtaaagtagtaagtcagtggttggttggtaagtaattgtgagtatggtcatcatct |
317 |
Q |
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| T |
55240163 |
gccactgccaacctcacttgaaattcaaataggaattggcttttgtaaagtagtaagtcagtggttggttggtaagtaattgtgagtatggtcatcatct |
55240262 |
T |
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| Q |
318 |
gattgagtcggcctcatgtcatgnnnnnnnnaacgctaatctactggaattatgatctttcattttc |
384 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
55240263 |
gattgagtcggcctcatgtcatgttttttttaacgctaatctactggaattatgatctttcattttc |
55240329 |
T |
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