View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20025_low_9 (Length: 382)
Name: NF20025_low_9
Description: NF20025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20025_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 21 - 377
Target Start/End: Complemental strand, 21815352 - 21814996
Alignment:
| Q |
21 |
aatgtcttcccgacgacaagattgcagccttgaaattgcactaacagccatcttctgtgattgaaatgtccccgagagtgacaaggcaggaccactagac |
120 |
Q |
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| T |
21815352 |
aatgtcttcccgacgacaagattgcagcctcgaaattgcactaacagccatcttctgtgattgaaatgaccccgagagtgacaaggcaggaccactagac |
21815253 |
T |
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| Q |
121 |
cttgcaggctccaaatcaatcaaaaccccaacatcaatcctatgcagtatggcataaaatggcttctctgtagtccttgcatggacccaaatagggttca |
220 |
Q |
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| T |
21815252 |
cttgcaggctccaaatcaatcaaaaccccaacatcaatcctatgcagtatggcataaaatggcttctctgtagtccttgcacggacccaaatagggttca |
21815153 |
T |
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| Q |
221 |
aacgtgaaatttccctagaagccacagcttttactagggaagaccctgaagggggagtaaacagtgttgtggcatcaacaccaattagacccataaaatg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21815152 |
aacgtgaaatttccctagaagccacagcttttactagggaagaccctgaagggggagtaaacagtgttgtggcatcaacaccaattagacccataaaatg |
21815053 |
T |
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| Q |
321 |
ttctgaaccaatatcacctaacaattgaacgcaattttcactgtaacctatgcttct |
377 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
21815052 |
ttctgaaccaatatcacctaacaattgaaagcaattttcactgtaacctatgattct |
21814996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 12992896 - 12992961
Alignment:
| Q |
121 |
cttgcaggctccaaatcaatcaaaaccccaacatcaatcctatgcagtatggcataaaatggcttc |
186 |
Q |
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|||||||| ||||||||||| | ||| ||||||||||||||||| || || ||||||| |||||| |
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| T |
12992896 |
cttgcaggttccaaatcaataacaacaccaacatcaatcctatgaagaataccataaaaaggcttc |
12992961 |
T |
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