View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20026_high_11 (Length: 324)
Name: NF20026_high_11
Description: NF20026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20026_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 41963359 - 41963669
Alignment:
| Q |
1 |
tcgcacaattcatattcccaatataccctccaccaccattattctctatcatacccatgttcatcaaactcgggttattctgaacgaaattaccatcgta |
100 |
Q |
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| T |
41963359 |
tcgcacaattcatattcccaatataccctccaccaccattattctctatcatacccatgttcatcaaactcgggttattctgaacgaaattaccatcgta |
41963458 |
T |
|
| Q |
101 |
gttgtagaatcctccactttgttgttgttgtaactgaagctgagtttgtatataactctgatgatcaaacgacgttgtatcttgagtactactatcatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963459 |
gttgtagaatcctccactttgttgttgttgtaactgaagctgagtttgtatataactctgatgatcaaacgacgttgtatcttgagtactactatcatat |
41963558 |
T |
|
| Q |
201 |
aggttttgttgtgcatgttgttcaaactgcattaaagggtaaccttgtaattgtatcctacttgaatttgaggatattccatattgaaaagttgagcctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963559 |
aggttttgttgtgcatgttgttcaaactgcattaaagggtaaccttgtaattgtatcctacttgaatttgaggatattccatattgaaaagttgagcctg |
41963658 |
T |
|
| Q |
301 |
ctagtgatatc |
311 |
Q |
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||||||||||| |
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| T |
41963659 |
ctagtgatatc |
41963669 |
T |
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