View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20026_high_2 (Length: 676)
Name: NF20026_high_2
Description: NF20026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20026_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 12 - 656
Target Start/End: Original strand, 37413497 - 37414145
Alignment:
| Q |
12 |
cagagaagaaaggaacaaaaagaatctatacatgtgtgtgttggaaatttattcttcaaccgtgaaggtggtgtgcgtcaatctacctctctaatatttg |
111 |
Q |
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| T |
37413497 |
cagagaagaaaggaacaaaaagaatctatacatgtgtgtgttggaaatttattcttcaaccgtgaaggtggtgtgcgtcaatctacctctccaat--ttg |
37413594 |
T |
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| Q |
112 |
cagcttggtgaaatcacggtaaaatcaatataattgggatacaagatttgaatatgcactaggtttgacgatataattctgttaaaaaatataggttttt |
211 |
Q |
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| T |
37413595 |
cagcttggtgaaatcacggtaaaatcaatataattgggatacaagatttgaatatgcactaggtttgacgatataattctgttaaaaaatataggttttt |
37413694 |
T |
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| Q |
212 |
gtcaaaattaatgtgtgaccatgataaaacaacatttagatagagagcatcatcgtaaaaagatgtattttattgttgtagcacaaaattactgtctaaa |
311 |
Q |
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| T |
37413695 |
gtcaaaattaatgtgtgaccatgataaaacaacatttagatagagagcatcatcgtaaaaagatgtattttattgttgtagcacaaaattactgtctaaa |
37413794 |
T |
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| Q |
312 |
cttccaaatgcactctttcatag-aataaaaacttcaaaatgcatgcactcacacttttattgttccaattaagagtgaatacacaaaaacagacatgct |
410 |
Q |
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| T |
37413795 |
cttccaaatgcactctttcatagaaaaaaaaacttcaaaatgcatgcactcacacttttattgttccaattaggagtgaatacacaaaaacagacatgct |
37413894 |
T |
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| Q |
411 |
gtgtatatgaaccatgcatatagcatttctcttgacacctcattggctagtggaagagtgtcttgaaatccagtaattctttatttcttcagctgttctt |
510 |
Q |
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| T |
37413895 |
gtgtatatgaaccatgcatatagcatttctcttgacacttcattggctagtggaagagtgtcttgaaatccagtaattctttatttcttcagctgttctt |
37413994 |
T |
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| Q |
511 |
ccaggtattcttcccgcaattaaaggccacctgaaaatgaatatact------aaatggttagttttattnnnnnnnnnntgatagataagccaagtgtt |
604 |
Q |
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| T |
37413995 |
ccaggtattcttcccgcaattaaaggccacctgaaaatgaatatactatattcaaatggttagttttatt-aaaaaaaaatgatagataagccaagtgtt |
37414093 |
T |
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| Q |
605 |
aattaattatataaaggaaatataatttaatcatacttcattacctatcccc |
656 |
Q |
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| T |
37414094 |
aattaattatataaaggaaatataatttaatcatacttcattacctatcccc |
37414145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 530
Target Start/End: Complemental strand, 16558960 - 16558896
Alignment:
| Q |
466 |
gagtgtcttgaaatccagtaattctttatttcttcagctgttcttccaggtattcttcccgcaat |
530 |
Q |
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| T |
16558960 |
gagtgtcttgaattccaatatttttctatttcttctgctgttcttccaggaattcttccagcaat |
16558896 |
T |
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