View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20026_high_3 (Length: 644)
Name: NF20026_high_3
Description: NF20026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20026_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 567; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 17 - 635
Target Start/End: Original strand, 37584797 - 37585415
Alignment:
| Q |
17 |
atgtaaagaacatacacaaaaacattgacagcgcaatttttagtggcaaactcatgaagcatgattatcatttactcaacatgtttgtataacttttact |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37584797 |
atgtaaagaacatacacaaaaacattgacagcgcaatttttagtggcaaactcatgaagcatgattatcatttactcaacatgtttgtataacttttact |
37584896 |
T |
|
| Q |
117 |
taatggaattgattccagtgcgggaaaatcagacttggatttgatgtaactttctttgcttttcgctgaatgaatgcatgcagtactccttgtttggctc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37584897 |
taatggaattgattccagtgcgggaaaatcagacttggatttgatgtaactttctttgcttttcgctgaatgaatgcatgcagtactccttctttggctc |
37584996 |
T |
|
| Q |
217 |
catcttgactttcggtgccatgattggtgcaataacaagtggacctattgcagatttcgttggacgaaagggagtaaattcaggaaaattattatggtcg |
316 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37584997 |
catcttgactttcggtgcgatgattggcgcaataacaagtggacctattgccgatttcgttggacgaaagggagtaaattcaggaaaattattatggtcg |
37585096 |
T |
|
| Q |
317 |
ttcagggattaacctccaaattgttaattattttatttggtgtattcaagataaataaaaagttagttttgcaatatatatgcaggcaatgagagtgtca |
416 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37585097 |
ttcagggattaacctccaaattgttaattattttatttggtgtattcaagataaataaaaagttagttttgcaatataaatgcaggcaatgagagtgtca |
37585196 |
T |
|
| Q |
417 |
agcggtttctgtattgtagggtggcttgttatttacttttctcaggttcttactacaaaacttttgtgatatttattgtcataactcataactgctctcc |
516 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37585197 |
agctgtttctgtattgtagggtggcttgttatttacttttctcaggttcttactacaaaacttttgtgatatttattgtcataactcataactgctctcc |
37585296 |
T |
|
| Q |
517 |
aaggattaactaannnnnnnncttcatatagggtatagttcctttggatattgggagactagcaacaggctatggaatgggagttttttcatttgtggtt |
616 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37585297 |
aaggattaactaattttttttcttcatatagggtatagttcctttggatattgggagactagcaacaggctatggaatgggagttttttcatttgtggtt |
37585396 |
T |
|
| Q |
617 |
ggttttagttctatatttt |
635 |
Q |
| |
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|||||||||||||| |||| |
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| T |
37585397 |
ggttttagttctatttttt |
37585415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 629
Target Start/End: Complemental strand, 37591790 - 37591153
Alignment:
| Q |
17 |
atgtaaagaacatacacaaaaacattgacagcgcaatttttagtggcaaactcatgaagcatgattatcatttactcaacatgtttgtataacttttact |
116 |
Q |
| |
|
||||||| ||| |||||| ||||||||||| | |||||||||||||||||||||||| |||||||||||| | || | ||||||||||||| |||||| |
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|
| T |
37591790 |
atgtaaaaaacttacacataaacattgacaacagaatttttagtggcaaactcatgaatcatgattatcatgtgcttagcatgtttgtataatttttaca |
37591691 |
T |
|
| Q |
117 |
taatggaattgattccagtgcgg--------gaaaatcagacttggatttgatgtaactttctttgcttttcgctgaatgaatgcatgca-------gta |
201 |
Q |
| |
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||| | | ||||| ||||||| | ||||||||||| | ||||| |||||| ||||||||||||||| |||||||||| ||||| ||| |
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| T |
37591690 |
taacgtatttgatcccagtgcagcagtgctggaaaatcagacctagatttaatgtaattttctttgcttttcgttgaatgaatgtatgcacaatgcagta |
37591591 |
T |
|
| Q |
202 |
ctccttgtttggctccatcttgactttcggtgccatgattggtgcaataacaagtggacctattgcagatttcgttggacgaaagggagtaaattcagga |
301 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||| ||| ||| |
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| T |
37591590 |
ctccttgtttggctccatcttgacttttggtgcgatgattggtgcaataactagtggacctattgccgaattcgttggacgaaagggggtaatttctgga |
37591491 |
T |
|
| Q |
302 |
aaattattatggtcgttcagggattaacctccaaattgttaattatttt-atttggtgtattcaagataaataaaaagttagttttgcaatatatatgca |
400 |
Q |
| |
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||||||| ||||| ||| || |||||| ||||||| ||||||||||| |||| | ||||||||| | ||||||||||| ||||||||| ||||||||| |
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|
| T |
37591490 |
aaattatgatggttgttttggaattaacttccaaatgtttaattatttttatttagggtattcaaggtcaataaaaagttggttttgcaacatatatgca |
37591391 |
T |
|
| Q |
401 |
ggcaatgagagtgtcaagcggtttctgtattgtagggtggcttgttatttacttttctcaggttcttactacaaaacttttgtgatatttattgtcataa |
500 |
Q |
| |
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|||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||| |||||||||| | |||||||||||||| ||| ||||||||| |
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|
| T |
37591390 |
ggcaatgagagtgtcaagcgctttcagtattgcagggtggcttgttatttacttttctgaggttcttacgataaaacttttgtgatgttttttgtcataa |
37591291 |
T |
|
| Q |
501 |
ctcataactgctctccaaggattaactaannnnnnnncttc---------atatagggtatagttcctttggatattgggagactagcaacaggctatgg |
591 |
Q |
| |
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|||||||| |||||||||||||||| | | | |||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
37591290 |
ctcataacctttctccaaggattaactgaacctttttttacctcttatatatatagggtatagttcctttggatattgggagactactaacaggatatgg |
37591191 |
T |
|
| Q |
592 |
aatgggagttttttcatttgtggttggttttagttcta |
629 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37591190 |
aatgggagttttttcatttgtggttagttttagttcta |
37591153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 153 - 463
Target Start/End: Original strand, 37462479 - 37462786
Alignment:
| Q |
153 |
ggatttgatgtaactttctttgcttttcgctgaatgaatgcatgcagtactccttgtttggctccatcttgactttcggtgccatgattggtgcaataac |
252 |
Q |
| |
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||||||||||||| ||||||||||||| | || ||| | ||||||||||||||||||||||||||||| || || ||||| |||||||| |||||||| |
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| T |
37462479 |
ggatttgatgtaattttctttgctttttgtggattgactaaatgcagtactccttgtttggctccatcttaacatttggtgcgatgattggcgcaataac |
37462578 |
T |
|
| Q |
253 |
aagtggacctattgcagatttcgttggacgaaagggagtaaattcaggaaaattattatggtcgttcagggattaacctccaaattgttaattat-ttta |
351 |
Q |
| |
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||||||||||||||| |||||||||||| ||||||| |||| |||||||||| || | || || || |||||| ||| |||||||||| || |||| |
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| T |
37462579 |
aagtggacctattgctgatttcgttggaagaaagggggtaatttcaggaaaacgatgctagttattttggaattaacttccgaattgttaatcatcttta |
37462678 |
T |
|
| Q |
352 |
tttggtgtattcaagataaataaaaagttagttttgcaatatatatgcaggcaatgagagtgtcaagcggtttctgtattgtagggtggcttgttattta |
451 |
Q |
| |
|
|| ||| || || |||||||||| |||||| |||||||||||||||||||||||||||||| | ||| ||||||| |||||||||||||||||| |
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|
| T |
37462679 |
ttatgtg----gaatattcataaaaagtttgttttggaatatatatgcaggcaatgagagtgtcaagtgctttttgtattgcagggtggcttgttattta |
37462774 |
T |
|
| Q |
452 |
cttttctcaggt |
463 |
Q |
| |
|
||||||| |||| |
|
|
| T |
37462775 |
cttttctgaggt |
37462786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 544 - 630
Target Start/End: Original strand, 37462869 - 37462955
Alignment:
| Q |
544 |
atagggtatagttcctttggatattgggagactagcaacaggctatggaatgggagttttttcatttgtggttggttttagttctat |
630 |
Q |
| |
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||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37462869 |
atagggtccagtgcctttggatattgggagactagctacaggatatggaatgggagttttttcatttgtggttggttttagttctat |
37462955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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