View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20026_high_4 (Length: 641)
Name: NF20026_high_4
Description: NF20026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20026_high_4 |
 | |
|
| [»] scaffold0032 (1 HSPs) |
| | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
| [»] scaffold0416 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
| [»] scaffold0281 (1 HSPs) |
| | |
|
| [»] scaffold0437 (1 HSPs) |
| | |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
| [»] scaffold0125 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 509; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 21 - 619
Target Start/End: Complemental strand, 41248465 - 41247877
Alignment:
| Q |
21 |
gaatcttatcctaaaccactctcactgtcatcatggatatgccaatttgacataattgaaggtgcaacaatggccttgctacagagatggacggaacctc |
120 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41248465 |
gaatcttatcctaaaccactctcactctcatcatggatatgccaatttgacataattgaaggtgcaacaatggccttgctacagagatggacgtaacctc |
41248366 |
T |
|
| Q |
121 |
aatttgacaccactctccctggtgttctcccacctaatattaattcaaatatgttgatccttattcctaagatcacaggggcgcaggttatgggagactt |
220 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41248365 |
aatttgacaccactctccctagtgttctcccacctaatattaattcaaatatgttggtccttattcctaagatcacaggggcgcaggttatgggagactt |
41248266 |
T |
|
| Q |
221 |
ccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaattttagctgacagactttctattatcactatgcgcatcatttctccggagcaa |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41248265 |
ccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaattttagctgacagactttctattattactatgcgcatcatttctccggagcaa |
41248166 |
T |
|
| Q |
321 |
cgggggtttattcgtgatagaaatatttcggattgtattattatggcatcagaggcggttaatatgattgac-aaaggcagtttggtggcaatgtggctt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
41248165 |
cgggggtttattcgtgatagaaatatttcggattgtattattatggcatcagaggcggttaatatgattgacaaaaggcagtttggtggcaatttggctt |
41248066 |
T |
|
| Q |
420 |
tgaaagttgatattaaaaaagcattcaacacgttggattggaactttttggccgcggtgcttcggaagtttggtttttcttctatgtttaccgactgaat |
519 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41248065 |
tgaaagttgatattaa----------aacacgttggattggaac-ttttggccgcggtgcttcggaagtttggtttttcttctatgtttaccgactgaat |
41247977 |
T |
|
| Q |
520 |
tcttgctattttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgacccttta |
619 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41247976 |
tcttgctattttgcactcagccaggctttctattttggtgaatggtaagacagtgggttttttctcttgttctcgtggtgtctgacaaggtgacccttta |
41247877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 619
Target Start/End: Original strand, 44377826 - 44377918
Alignment:
| Q |
527 |
attttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgacccttta |
619 |
Q |
| |
|
||||| ||||| || ||||| ||||||||||||||||| || || |||||||| ||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
44377826 |
attttacactcggcaagactctctattttggtgaatggcaaagcggtgggtttcttctcttgtgtccgtggtgttcgtcaaggagacccttta |
44377918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 619
Target Start/End: Original strand, 44393406 - 44393498
Alignment:
| Q |
527 |
attttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgacccttta |
619 |
Q |
| |
|
||||| ||||| || ||||| ||||||||||||||||| || || |||||||| ||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
44393406 |
attttacactcggcaagactctctattttggtgaatggcaaagcggtgggtttcttctcttgtgtccgtggtgttcgtcaaggagacccttta |
44393498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 183 - 278
Target Start/End: Original strand, 44377481 - 44377576
Alignment:
| Q |
183 |
attcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaattttagctgac |
278 |
Q |
| |
|
|||||||| || ||||||| || | ||||||||| ||||| ||||| ||| | || |||||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
44377481 |
attcctaaaattccaggggcccaagctatgggagatttccgacctattgctttagctaattttcaatttaaaattgtgacgaagattttggctgac |
44377576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 183 - 278
Target Start/End: Original strand, 44393061 - 44393156
Alignment:
| Q |
183 |
attcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaattttagctgac |
278 |
Q |
| |
|
|||||||| || ||||||| || | ||||||||| ||||| ||||| ||| | || |||||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
44393061 |
attcctaaaattccaggggcccaagctatgggagatttccgacctattgctttagctaattttcaatttaaaattgtgacgaagattttggctgac |
44393156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 548 - 603
Target Start/End: Original strand, 32299716 - 32299771
Alignment:
| Q |
548 |
tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcg |
603 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||| |||| |||||||| ||||| |
|
|
| T |
32299716 |
tctattttggttaatggtaaggcggttggttttttcgcttgctctcgtggggttcg |
32299771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 597
Target Start/End: Complemental strand, 33236492 - 33236443
Alignment:
| Q |
548 |
tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtgg |
597 |
Q |
| |
|
||||||||||| ||||| |||||||| || |||||||||||||| ||||| |
|
|
| T |
33236492 |
tctattttggttaatggcaaggcagttggctttttctcttgttcccgtgg |
33236443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 141 - 619
Target Start/End: Complemental strand, 10708905 - 10708426
Alignment:
| Q |
141 |
ggtgttctcccacctaatattaattcaaatatgttgatccttattcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaa |
240 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
10708905 |
ggtgttctcccgcctaatattaattcaaatatgctggtccttattcctaagatcacaggggcgcatgccatgggggacttccgtcctatagctcttgcaa |
10708806 |
T |
|
| Q |
241 |
attttcaatttaaaattgttacgaaaattttagctgacagactttctattatcactatgcgcatcatttctccggagcaacgggggtttattcgtgatag |
340 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
10708805 |
attttcaatttaaaattgtttcgaaaattttagttgacaaactttctattatcactatgcgcatcatttcttcggagcaacaggggtttattcaggatag |
10708706 |
T |
|
| Q |
341 |
aaatatttcggattgtattattatggcatcagaggcggttaatatgattgacaaa-ggcagtttggtggcaatgtggctttgaaagttgatattaaaaaa |
439 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10708705 |
gaatatttcggtttgtattattattgcatcaaaggcggttagtatgattgataaaaggcagtttggtggcaatgtggctttgaaagttgatattaaaaaa |
10708606 |
T |
|
| Q |
440 |
gcattcaacacgttggattggaactttttggccgcggtgcttcggaagtttggtttttcttctatgtttaccgactgaattcttgctattttgcactcag |
539 |
Q |
| |
|
|| ||||| |||||||||||||||||| ||| | |||||| || |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10708605 |
gccttcaatacgttggattggaactttctggttgtggtgctccgaaagtttggtttttcttctctgtttaccgactggattcttgctattttgcactcag |
10708506 |
T |
|
| Q |
540 |
ccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgacccttta |
619 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
10708505 |
ctagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtagtgtccgacaaggtgacccttta |
10708426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 141 - 619
Target Start/End: Complemental strand, 10922675 - 10922196
Alignment:
| Q |
141 |
ggtgttctcccacctaatattaattcaaatatgttgatccttattcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaa |
240 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
10922675 |
ggtgttctcccgcctaatattaattcaaatatgctggtccttattcctaagatcacaggggcgcatgccatgggggacttccgtcctatagctcttgcaa |
10922576 |
T |
|
| Q |
241 |
attttcaatttaaaattgttacgaaaattttagctgacagactttctattatcactatgcgcatcatttctccggagcaacgggggtttattcgtgatag |
340 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
10922575 |
attttcaatttaaaattgtttcgaaaattttagttgacaaactttctattatcactatgcgcatcatttcttcggagcaacaggggtttattcaggatag |
10922476 |
T |
|
| Q |
341 |
aaatatttcggattgtattattatggcatcagaggcggttaatatgattgacaaa-ggcagtttggtggcaatgtggctttgaaagttgatattaaaaaa |
439 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10922475 |
gaatatttcggtttgtattattattgcatcaaaggcggttagtatgattgataaaaggcagtttggtggcaatgtggctttgaaagttgatattaaaaaa |
10922376 |
T |
|
| Q |
440 |
gcattcaacacgttggattggaactttttggccgcggtgcttcggaagtttggtttttcttctatgtttaccgactgaattcttgctattttgcactcag |
539 |
Q |
| |
|
|| ||||| |||||||||||||||||| ||| | |||||| || |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10922375 |
gccttcaatacgttggattggaactttctggttgtggtgctccgaaagtttggtttttcttctctgtttaccgactggattcttgctattttgcactcag |
10922276 |
T |
|
| Q |
540 |
ccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgacccttta |
619 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
10922275 |
ctagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtagtgtccgacaaggtgacccttta |
10922196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 280
Target Start/End: Original strand, 20382629 - 20382727
Alignment:
| Q |
183 |
attcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaaatttt-caatttaaaattgttacgaaaattttagctgacag |
280 |
Q |
| |
|
||||||||| ||||| |||| |||| |||||| |||||| ||| ||||||||| || ||||| || |||||||||||||| |||| |||||| ||||| |
|
|
| T |
20382629 |
attcctaaggtcacacgggcccaggctatgggtgacttctgtcttatagctctagcggatttttcagtttaaaattgttactaaaactttagcagacag |
20382727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 153; Significance: 9e-81; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 210 - 597
Target Start/End: Original strand, 125393 - 125776
Alignment:
| Q |
210 |
atgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaattttagctgacagactttctattatcactatgcgcatcattt |
309 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
125393 |
atgggagactttcgccctattgctcttgcaaattttcaatttaaaattgttacgaagatattagctgacaggctctctat-----ctatgcgcatcattt |
125487 |
T |
|
| Q |
310 |
ctccggagcaacgggggtttattcgtgatagaaatatttcggattgtattattatggcatcagaggcggttaatatgattga-caaaggcagtttggtgg |
408 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||| |||| ||||||||| | |||||| ||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
125488 |
ctccggagcaacgggcttttattcatgataggaatatatcgggatgtattattcttgcatcaaaggtcgttaataggattgataaaaggcagtttggtgg |
125587 |
T |
|
| Q |
409 |
caatgtggctttgaaagttgatattaaaaaagcattcaacacgttggattggaactttttggccgcggtgcttcggaagtttggtttttcttctatgttt |
508 |
Q |
| |
|
||||||||||||||| |||||||||||||| | ||| ||||||| |||||||| ||||||| ||| |||| || || |||||||||| ||||| |
|
|
| T |
125588 |
caatgtggctttgaaggttgatattaaaaaggtatttgacacgttagattggaattttttggttgcgatgctaaaaaaattcggtttttctttggtgttt |
125687 |
T |
|
| Q |
509 |
accgactgaattcttgctattttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtgg |
597 |
Q |
| |
|
|| |||| || |||||||||||||||||||| || |||||||||||||||||| ||||||| ||||| ||||| |||||||| |||| |
|
|
| T |
125688 |
acgaactggatccttgctattttgcactcagctaggctttctattttggtgaatcgtaaggcggtgggattttttacttgttcttgtgg |
125776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 152; Significance: 4e-80; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 186 - 616
Target Start/End: Complemental strand, 44080 - 43649
Alignment:
| Q |
186 |
cctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaattttagctgacagacttt |
285 |
Q |
| |
|
|||||| ||| ||| ||| |||| ||||| |||||||||||||||||||||||||| || |||||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
44080 |
cctaaggtcaaaggagcgtaggtcatgggggacttccgtcctatagctcttgcaaacttccaatttaaaattgtcacaaaaatcttagctgacagacttt |
43981 |
T |
|
| Q |
286 |
ctattatcactatgcgcatcatttctccggagcaacgggggtttattcgtgatagaaatatttcggattgtattattatggcatcagaggcggttaatat |
385 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||| | |
|
|
| T |
43980 |
ctattattgctatgcgcattatttctccggagcagcgggggtttattcgtgatagaaatatttcggagtgtattattcttgcatcagaggccattaattt |
43881 |
T |
|
| Q |
386 |
gattgacaaa-ggcagtttggtggcaatgtggctttgaaagttgatattaaaaaagcattcaacacgttggattggaactttttggccgcggtgcttcgg |
484 |
Q |
| |
|
|||||| ||| | ||||||| ||||||||||| ||| |||| ||||||||||| || || ||||||||||| || || ||| |||||||| | |
|
|
| T |
43880 |
gattgataaatgacagtttgacggcaatgtggcattgtaagtcgatattaaaaaggcctttgttacgttggattgaaatttcttgatagcggtgctcaga |
43781 |
T |
|
| Q |
485 |
aagtttggtttttcttctatgtttaccgactgaattcttgctattttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttct |
584 |
Q |
| |
|
|| |||||||| || | ||||||| ||||| ||||||||||| || | ||||| | || ||||| ||||||||||||||||||||||| || ||| |
|
|
| T |
43780 |
aaatttggtttctcacatttgtttactgactggattcttgctatcttatattcagctcggctctctatcttggtgaatggtaaggcagtgggattcttca |
43681 |
T |
|
| Q |
585 |
cttgttctcgtggtgttcgacaaggtgaccct |
616 |
Q |
| |
|
|||||||||||| || ||||| || |||||| |
|
|
| T |
43680 |
attgttctcgtggagtccgacagggggaccct |
43649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 8e-66; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 141 - 619
Target Start/End: Complemental strand, 21490691 - 21490212
Alignment:
| Q |
141 |
ggtgttctcccacctaatattaattcaaatatgttgatccttattcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaa |
240 |
Q |
| |
|
|||| |||||| ||||||||||| || |||||| | | || | |||||| ||||||| |||||||| ||||| ||||| ||||||||||||||||| | |
|
|
| T |
21490691 |
ggtgctctcccgcctaatattaactctaatatgcttgtttttctccctaaggtcacaggagcgcaggtcatgggggactttcgtcctatagctcttgcta |
21490592 |
T |
|
| Q |
241 |
attttcaatttaaaattgttacgaaaattttagctgacagactttctattatcactatgcgcatcatttctccggagcaacgggggtttattcgtgatag |
340 |
Q |
| |
|
| || |||||||||||||| || |||||||||||||||||||| |||||||| ||||||| | ||||||||||||| || |||||||||| |||||| |
|
|
| T |
21490591 |
acttccaatttaaaattgtcacaaaaattttagctgacagactctctattattgctatgcgtgttgtttctccggagcagcgcgggtttattcatgatag |
21490492 |
T |
|
| Q |
341 |
aaatatttcggattgtattattatggcatcagaggcggttaatatgattgacaaa-ggcagtttggtggcaatgtggctttgaaagttgatattaaaaaa |
439 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||| ||||| ||||||| ||| | ||||||| ||||||||||| || ||||| ||||||||||| |
|
|
| T |
21490491 |
aaatatttcggagtgtattattattgcatcggaggccattaatttgattgataaacgatagtttggcggcaatgtggcattaaaagtcgatattaaaaag |
21490392 |
T |
|
| Q |
440 |
gcattcaacacgttggattggaactttttggccgcggtgcttcggaagtttggtttttcttctatgtttaccgactgaattcttgctattttgcactcag |
539 |
Q |
| |
|
|| || | || ||||||||||| || ||| |||||||| | || |||||||| || | ||||||| ||||| || |||||||| || || |||| |
|
|
| T |
21490391 |
gcctttgatacattggattggaatttcttgatagcggtgctcagaaaatttggtttctcacatttgtttactgactggatacttgctatcttacattcag |
21490292 |
T |
|
| Q |
540 |
ccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgacccttta |
619 |
Q |
| |
|
| | || || || ||||||||||||||||||||||| || ||| ||||||||| || || ||| | || ||||||||| |
|
|
| T |
21490291 |
ctcggctctccatcttggtgaatggtaaggcagtgggattcttcaattgttctcggggagtccgatagggggacccttta |
21490212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 41346631 - 41346571
Alignment:
| Q |
209 |
tatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaatt |
269 |
Q |
| |
|
||||||||||| ||||||||| ||| |||||| ||||||||||||||| |||| |||||| |
|
|
| T |
41346631 |
tatgggagactaccgtcctatcgctgctgcaaactttcaatttaaaattattactaaaatt |
41346571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 597
Target Start/End: Original strand, 21810796 - 21810845
Alignment:
| Q |
548 |
tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtgg |
597 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||| || ||||| |
|
|
| T |
21810796 |
tctattttggtgaatggaaaggcagttggttttttttcttgctcccgtgg |
21810845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 196 - 286
Target Start/End: Complemental strand, 31349273 - 31349183
Alignment:
| Q |
196 |
caggggcgcaggttatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaattttagctgacagactttc |
286 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||| | |||||||||| ||||||||| | || |||||||||||||||||| |||| |
|
|
| T |
31349273 |
caggggcgcaggttatgggtgatttccgacctatagctttgacaaattttcagtttaaaattatcacaaaaattttagctgacagattttc |
31349183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 548 - 615
Target Start/End: Original strand, 15157168 - 15157235
Alignment:
| Q |
548 |
tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgaccc |
615 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
15157168 |
tctattttggtgaatgcaaaagcggtgggttttttctcttgttcttgtggtgttcgacaaggagaccc |
15157235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 615
Target Start/End: Complemental strand, 15144285 - 15144242
Alignment:
| Q |
572 |
gtgggttttttctcttgttctcgtggtgttcgacaaggtgaccc |
615 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
15144285 |
gtgggatttttctcttgctctcgtggtgttcgacaaggggaccc |
15144242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 16224540 - 16224589
Alignment:
| Q |
222 |
cgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaatttt |
271 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
16224540 |
cgtcctatttctctcgcaaattttcaatttaaaattgttgcgaagatttt |
16224589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 22834049 - 22833997
Alignment:
| Q |
240 |
aattttcaatttaaaattgttacgaaaattttagctgacagactttctattat |
292 |
Q |
| |
|
|||||||||||||||||| |||| || ||||| ||||||||||| ||||||| |
|
|
| T |
22834049 |
aattttcaatttaaaattattactaagattttggctgacagactggctattat |
22833997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 486 - 619
Target Start/End: Original strand, 12392 - 12525
Alignment:
| Q |
486 |
agtttggtttttcttctatgtttaccgactgaattcttgctattttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctc |
585 |
Q |
| |
|
||||||||||||||||| | || || | || ||| | || ||||| ||||| |||||||||||||||||||||||||| ||||| |||| || ||||| |
|
|
| T |
12392 |
agtttggtttttcttctgttttctccaattggattttggcaattttacactcggccagactttctattttggtgaatggcaaggcgctggggttcttctc |
12491 |
T |
|
| Q |
586 |
ttgttctcgtggtgttcgacaaggtgacccttta |
619 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||| |
|
|
| T |
12492 |
ttgtgtccgtggtgttcgtcaaggggacccttta |
12525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 548 - 615
Target Start/End: Original strand, 12161157 - 12161224
Alignment:
| Q |
548 |
tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgaccc |
615 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
12161157 |
tctattttggtgaatgcaaaagcggtgggttttttctcttgttcttgtggtgttcgacaaggagaccc |
12161224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 279
Target Start/End: Original strand, 7664808 - 7664850
Alignment:
| Q |
237 |
gcaaattttcaatttaaaattgttacgaaaattttagctgaca |
279 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
7664808 |
gcaaattttcagtttaaaattgttactaaaattttagctgaca |
7664850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 548 - 600
Target Start/End: Original strand, 13658 - 13710
Alignment:
| Q |
548 |
tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgt |
600 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13658 |
tctattttagtgaatggaaaggcagtgggttttttctcttgctctcgtggtgt |
13710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 527 - 615
Target Start/End: Original strand, 19178093 - 19178181
Alignment:
| Q |
527 |
attttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgaccc |
615 |
Q |
| |
|
||||||| |||||| | |||||||||||||||||||||||||| |||||||| || ||||| || || ||||| || ||||| ||||| |
|
|
| T |
19178093 |
attttgctttcagcccgtctttctattttggtgaatggtaaggcggtgggtttcttttcttgctcccgcggtgtccgtcaaggagaccc |
19178181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 209 - 277
Target Start/End: Complemental strand, 14676977 - 14676909
Alignment:
| Q |
209 |
tatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaattttagctga |
277 |
Q |
| |
|
|||||| |||| ||||||||| |||||||| |||||||| || ||||| | || |||||||||||||| |
|
|
| T |
14676977 |
tatgggtgactaccgtcctattgctcttgcgaattttcagttcaaaataataactaaaattttagctga |
14676909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 8354 - 8416
Alignment:
| Q |
222 |
cgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaattttagctgacagactt |
284 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||||||| ||||||||| | || ||||||||| |
|
|
| T |
8354 |
cgtcccatagcgcttgccaattttcaatttaaaattgtcacgaaaattgtggccgacagactt |
8416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0437 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0437
Description:
Target: scaffold0437; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 8705 - 8778
Alignment:
| Q |
196 |
caggggcgcaggttatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaatt |
269 |
Q |
| |
|
||||| ||| |||||||||||||| || || || ||||||||||||||||| |||||| || |||| |||||| |
|
|
| T |
8705 |
cagggccgcgggttatgggagactatcgaccgattgctcttgcaaattttcagtttaaagttattactaaaatt |
8778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 588
Target Start/End: Complemental strand, 22013 - 21973
Alignment:
| Q |
548 |
tctattttggtgaatggtaaggcagtgggttttttctcttg |
588 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
22013 |
tctattttggtgaatggaaaggcagttggttttttttcttg |
21973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 209 - 277
Target Start/End: Complemental strand, 26301 - 26233
Alignment:
| Q |
209 |
tatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaattttagctga |
277 |
Q |
| |
|
|||||| |||| ||||||||| |||||||| |||||||| || ||||| | || |||||||||||||| |
|
|
| T |
26301 |
tatgggtgactaccgtcctattgctcttgcgaattttcagttcaaaataataactaaaattttagctga |
26233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 26695337 - 26695389
Alignment:
| Q |
240 |
aattttcaatttaaaattgttacgaaaattttagctgacagactttctattat |
292 |
Q |
| |
|
|||||||||||||||||| |||| || ||||| ||||||||||| ||||||| |
|
|
| T |
26695337 |
aattttcaatttaaaattattactaagattttggctgacagactggctattat |
26695389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 26965069 - 26965121
Alignment:
| Q |
240 |
aattttcaatttaaaattgttacgaaaattttagctgacagactttctattat |
292 |
Q |
| |
|
|||||||||||||||||| |||| || ||||| ||||||||||| ||||||| |
|
|
| T |
26965069 |
aattttcaatttaaaattattactaagattttggctgacagactggctattat |
26965121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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