View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20026_high_7 (Length: 399)
Name: NF20026_high_7
Description: NF20026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20026_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 225 - 388
Target Start/End: Complemental strand, 17764632 - 17764469
Alignment:
| Q |
225 |
ctatgcatgaaaccagaccaaaattcataccatagtacactaaattgatgaaatgcatatatacaataaaaccttctaaaagagatgcaaacgaaaagaa |
324 |
Q |
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| T |
17764632 |
ctatgcatgaaaccagaccaaaattcatacgacagtacactaaattgatgaaatgcatatatacaataaaaccttctaaaagagatgcaaacgaaaagaa |
17764533 |
T |
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| Q |
325 |
ccaagtacctttctgagtccaaatccaccaaggaagtattaccaacataggtcttcacaggttc |
388 |
Q |
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| T |
17764532 |
ccaagtacctttctgagtccaaatccaccaaggaagtattaccaatatagttcttcacaggttc |
17764469 |
T |
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Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 17764812 - 17764727
Alignment:
| Q |
45 |
tgaattactaagatctaaattaagtaaacactgctaaccagtagagaacaaagcgcccaatcaaagactaaaacacaaaagaagga |
130 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
17764812 |
tgaattactaagatctaaattaagtaaacactgctaaagagtagagaacaaagcgcccaagcaaagactgaaacacaaaagaagga |
17764727 |
T |
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