View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20026_low_1 (Length: 876)
Name: NF20026_low_1
Description: NF20026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20026_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 547; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 1 - 680
Target Start/End: Original strand, 1035770 - 1036439
Alignment:
| Q |
1 |
aaaattcaacttcaactctatctaacgacatcactggtaatgacaaagagaaatttcttgacggacttttagtttcaggatttgatgaatcatcatgcat |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1035770 |
aaaattcaacttcaa---tatctaacgacatcactggtaatgacaaagagaaatttcttgatggacttttagtttcaggatttgatgaatcatcatgcat |
1035866 |
T |
|
| Q |
101 |
aagcaggtcacaatctcatcatttctac-acaaaccttctccatatttgttatctaaacttcaaaagtatgaagaaaatcatagaaaatgtggaccaaac |
199 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1035867 |
aagcaggtcacaatctcat---ttctaccacaaaccttctccatatttgttatctaaacttggaaagtatgaagaaaatcatagaaaatgtggaccaaac |
1035963 |
T |
|
| Q |
200 |
actagagctttcaacgaagacatgaaaattattgcaaaatataaggaaaatggtactgattgtgctgcaa-----aaacaacatgcaaatacattatttg |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1035964 |
actagagctttcaacgaagacatgaaaattattgcaaaatataaggaaaatggtactgattgtgctgcaaaaattaaacaacatgcaaatacattatttt |
1036063 |
T |
|
| Q |
295 |
gttaccagcaaatgggttaggtaaccaaaaaattagcatggcttcatcatttctttacgcgatgctaacggatcgcgttatgcatgtacaatttgggaaa |
394 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1036064 |
gttaccagcaaatgggttaggtaaccaaataattaccgcggcttcatcatttctttacgcgatgctaacggatcgcgttat----------tttgggaaa |
1036153 |
T |
|
| Q |
395 |
gacaaagaaggtttattttgtgaaccattttttaattcaacttggttgttaccaaacaactctcctttttgggatgcaaacgatgttaaaacatatcaaa |
494 |
Q |
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| T |
1036154 |
gacaaagaaggtttattttgtgaaccatttttgaattcaacttggttgttaccaaacgactctcctttttgggatgcaaacgatgttaaaacatatcaaa |
1036253 |
T |
|
| Q |
495 |
gcacaattgagatggagattatgtctaatgcattgaatgaagatttaccatcaacaatgtatgtggatctaagatatagcggtacatctgatgagagatt |
594 |
Q |
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| T |
1036254 |
gcacaattgagatggagattatgtctaatacattgaatgaagatttaccatcaacaatgtatgtggatctaagatatagtggtacatctgatgagagatt |
1036353 |
T |
|
| Q |
595 |
ttttcactgtgaccacagtcaatttcttctcagtaaaattcctctgttgtttttcgatgcaggtgagtattttataccttcatttt |
680 |
Q |
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| T |
1036354 |
ttttcactgtgaccacagtcaatttcttctcagtaaaattcctctgttgtttttcgatgcaggtgagtattttataccttcatttt |
1036439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 390 - 495
Target Start/End: Original strand, 1011102 - 1011207
Alignment:
| Q |
390 |
ggaaagacaaagaaggtttattttgtgaaccattttttaattcaacttggttgttaccaaacaactctcctttttgggatgcaaacgatgttaaaacata |
489 |
Q |
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||||||||||| ||||| |||||||||| || ||||| ||||||||||||||||||||| | || |||||||||||| ||| ||| ||||| ||||||| |
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| T |
1011102 |
ggaaagacaaacaaggtatattttgtgagccttttttgaattcaacttggttgttaccagaaaagtctcctttttggaatgaaaatcatgttgaaacata |
1011201 |
T |
|
| Q |
490 |
tcaaag |
495 |
Q |
| |
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|||||| |
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|
| T |
1011202 |
tcaaag |
1011207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 761 - 814
Target Start/End: Original strand, 1030077 - 1030130
Alignment:
| Q |
761 |
ctttacaatccgattcttagtaaggagatttgtgaacgtgagtttacattggag |
814 |
Q |
| |
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||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1030077 |
ctttacaattcgattcaaggtaaggagatttgtgaacgtgagtttacattggag |
1030130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 2 - 764
Target Start/End: Complemental strand, 6939073 - 6938307
Alignment:
| Q |
2 |
aaattcaacttcaactctatctaacgacatcactggtaatgacaaagagaaatttcttgacggacttttagtttcaggatttgatgaatcatcatgcata |
101 |
Q |
| |
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||||| ||||||||||| | | || || ||||||| | |||| ||||||||||| |||||||||||||||||||| |||||||||||| ||||||| || |
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| T |
6939073 |
aaatttaacttcaactccaccaaaagagatcactgatgatgagaaagagaaattgcttgacggacttttagtttctggatttgatgaagcatcatgtgta |
6938974 |
T |
|
| Q |
102 |
agcaggtcacaatctcat-------------catttctacacaaaccttctccatatttgttatctaaacttcaaaagtatgaagaaaatcatagaaaat |
188 |
Q |
| |
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||||||| |||||||||| ||| || ||||||||||||||||||||| |||||||||| ||| ||||||||| |||||||| | |
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| T |
6938973 |
agcaggttacaatctcatttctatcacaaaccatctcctcacaaaccttctccatatttgatatctaaactaagaaaatatgaagaacttcatagaaggt |
6938874 |
T |
|
| Q |
189 |
gtggaccaaacactagagctttcaacgaagacatgaaaattattgcaaaatataaggaaaatggtactgattgtgctgcaaaaacaacatgcaaatacat |
288 |
Q |
| |
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||||||| ||||||||||||| ||| ||||||||||||| ||| |||||| |||| |||||||||| || |||||| |||||||||||||||||| |
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| T |
6938873 |
gtggacctaacactagagcttacaatgaagacatgaaaaaaattacaaaatctaagaaaaatggtac---ttctgctgc---aacaacatgcaaatacat |
6938780 |
T |
|
| Q |
289 |
tatttggttaccagcaaatgggttaggtaaccaaaaaattagcatggcttcatcatttctttacgcgatgctaacggatcgcgttatgcatgtacaattt |
388 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||| || ||| | ||||||| || ||||||| ||||| ||| |
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| T |
6938779 |
tatttggttacctgcaaatggtttaggtaaccaaataattagcatggcttcatcatttctatatgcgctcctaacgggacgtgttatgctcgtacagttt |
6938680 |
T |
|
| Q |
389 |
gggaaagacaaagaaggtttattttgtgaaccattttttaattcaacttggttgttaccaaacaactctcctttttgggatgcaaacgatgttaaaacat |
488 |
Q |
| |
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|| ||||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||| | || |||||||||||| ||||| | | ||| |||||| |
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| T |
6938679 |
ggaaaagacaaagaaggtttattttgcgaaccatttctgaattcgacttggttgttaccagaaaaatctcctttttggaatgcagaaaaagttcaaacat |
6938580 |
T |
|
| Q |
489 |
atcaaagcacaattgagatggagattatgtctaatgcattgaatgaagatttaccatcaacaatgtatgtggatctaagatatagcggtacatctgatga |
588 |
Q |
| |
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|||||||||||||| |||||| | | ||||| |||| ||||||||||| |||||| || || ||||| || || ||||||| |||||| || || |
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| T |
6938579 |
atcaaagcacaattaagatgg---gtggggctaatacattaaatgaagattttccatcagcattgcatgtgaatttaggatatagtcctacatcagaaga |
6938483 |
T |
|
| Q |
589 |
gagattttttcactgtgaccacagtcaatttcttctcagtaaaattcctctgttgtttttcgatgcaggtgagtattttataccttcatttttcatgaca |
688 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| || |||||| |||||||| |||| || |||||||||||| |
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| T |
6938482 |
gagattttttcactgtgaccacaaccaatttcttctcagtaatattcctcttttgtttttggaagcaggtcagtattttgtaccctcttttttcatgaca |
6938383 |
T |
|
| Q |
689 |
ccaattttcgaaaaagagttaaacaaaatgtttccagaaattacctcaatttttcaccatttgggacgctaccttt |
764 |
Q |
| |
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|| |||||| | ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| |
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| T |
6938382 |
ccgattttcaagaaagagttaaacaaaatgtttccagaaatcacctcaacttttcaccatttgggacgttaccttt |
6938307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 779 - 836
Target Start/End: Complemental strand, 6937791 - 6937734
Alignment:
| Q |
779 |
agtaaggagatttgtgaacgtgagtttacattggagccttgttatcattctgctcctt |
836 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
6937791 |
agtaacgagatttgtgaacgtgagtttacattggagccttgttatcattatcctcctt |
6937734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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