View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20026_low_10 (Length: 351)
Name: NF20026_low_10
Description: NF20026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20026_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 7046651 - 7046972
Alignment:
| Q |
19 |
aagtcctagcagataagccagcataattccaagtgtgacagaaagctatgcagaaaacaaaaatttaaaataaagctcactaatctaggaagtgataatt |
118 |
Q |
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| T |
7046651 |
aagtcctagcagataagccagcataattccaagggtgacagaaagctatgcagaaaacaaaaattttaaataaagctcactaatctaggaagtgataatt |
7046750 |
T |
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| Q |
119 |
tattcaaatgtagcaccaaaatagaaatttaactctaattgatggtatttaccaacctggttaactgaaaccagacttcccctcaagttttgaggtgata |
218 |
Q |
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| T |
7046751 |
tattcaaatgtagcaccaaaatagaaatttaactctaattgatggtatttaccaacctggttaaccgaaaccagacttcccctcaagttttgaggtgata |
7046850 |
T |
|
| Q |
219 |
tctcagctatatacactggcacctgtatgaattaattcgaaaactcaattattgtcttctcatataaattgatcacacactagcaaaagtgaaaacgatt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7046851 |
tctcagctatatacactggcacctgtatgaattaattcgaaaactcaattattgtctactcatataaattgatcacacactagcaaaagtgaaaacgatt |
7046950 |
T |
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| Q |
319 |
ggaaattaccgtgtaagatatt |
340 |
Q |
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|||||||||||||||||||||| |
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| T |
7046951 |
ggaaattaccgtgtaagatatt |
7046972 |
T |
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