View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20026_low_11 (Length: 345)
Name: NF20026_low_11
Description: NF20026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20026_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 335
Target Start/End: Original strand, 9463447 - 9463763
Alignment:
| Q |
20 |
cactacagtatcatgatgtatccgtgaaaagtttttcgtgagaacaagcatttccctttcaaaaattatgtatttcgggaccaattagtcgtgataagat |
119 |
Q |
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| T |
9463447 |
cactacagtatcat-atgtatccgtgaaaagtttttcgtgagaacaagtatttccctttcaaaaattatgtatttcgggaccaattagtcccgataaaat |
9463545 |
T |
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| Q |
120 |
tgaactagaaattgaactctcatgtatatttgggaaattttt--aagtcaaaaaattgtacctgtatagttaatgttgctgtagttaactaagagaacca |
217 |
Q |
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| T |
9463546 |
tgaactagaaattgtactctcatgtacatttgggaaactctttaaagtcaaataatggtacctgtatagttaatgttgctatagtttactaagagaacca |
9463645 |
T |
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| Q |
218 |
tttcaccatgaaaatcaacaatagcttttctaattttttccatttcctctttatattctgcttctgaaggttgactaccatttggtccccataaatcaat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9463646 |
tttcaccatgaaaatcaacaatagcttttctaattttttccatttcctccttatattctgcttctgaaggttgactaccatttggtccccataaatcaac |
9463745 |
T |
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| Q |
318 |
tactctcttgattctctg |
335 |
Q |
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|||||||||||||||||| |
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| T |
9463746 |
tactctcttgattctctg |
9463763 |
T |
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