View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20026_low_12 (Length: 329)

Name: NF20026_low_12
Description: NF20026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20026_low_12
NF20026_low_12
[»] chr7 (11 HSPs)
chr7 (1-200)||(37096741-37096952)
chr7 (1-154)||(37090432-37090585)
chr7 (254-329)||(31398233-31398308)
chr7 (262-329)||(41590415-41590482)
chr7 (253-329)||(9363496-9363570)
chr7 (253-329)||(46259980-46260054)
chr7 (253-329)||(26018149-26018225)
chr7 (253-327)||(35457095-35457167)
chr7 (252-291)||(48145659-48145698)
chr7 (263-329)||(44496699-44496765)
chr7 (260-329)||(35822868-35822937)
[»] chr2 (15 HSPs)
chr2 (251-329)||(17999562-17999640)
chr2 (251-325)||(29449324-29449397)
chr2 (252-325)||(12784282-12784355)
chr2 (254-329)||(1040622-1040697)
chr2 (260-329)||(42532632-42532701)
chr2 (251-297)||(40700336-40700382)
chr2 (252-329)||(45420244-45420321)
chr2 (252-321)||(36190906-36190976)
chr2 (251-329)||(43658596-43658674)
chr2 (253-329)||(3771480-3771556)
chr2 (253-329)||(4319815-4319891)
chr2 (251-294)||(10472048-10472091)
chr2 (260-326)||(7084608-7084674)
chr2 (260-326)||(19843596-19843662)
chr2 (252-329)||(40357972-40358049)
[»] chr3 (13 HSPs)
chr3 (253-329)||(34592173-34592249)
chr3 (254-329)||(16479741-16479816)
chr3 (251-329)||(52485581-52485659)
chr3 (253-329)||(26772477-26772554)
chr3 (251-329)||(45186436-45186514)
chr3 (253-320)||(52089821-52089888)
chr3 (251-329)||(37894126-37894204)
chr3 (257-297)||(23868869-23868909)
chr3 (251-329)||(49761071-49761149)
chr3 (252-329)||(52100369-52100446)
chr3 (260-326)||(1436928-1436994)
chr3 (260-326)||(51698970-51699036)
chr3 (251-288)||(51771349-51771386)
[»] chr4 (10 HSPs)
chr4 (254-329)||(55609052-55609127)
chr4 (255-329)||(193641-193715)
chr4 (251-325)||(36123345-36123418)
chr4 (258-320)||(32224048-32224110)
chr4 (252-329)||(20118892-20118969)
chr4 (262-329)||(48649627-48649694)
chr4 (251-329)||(1795866-1795944)
chr4 (251-329)||(49585103-49585181)
chr4 (251-329)||(50633674-50633753)
chr4 (251-289)||(56271508-56271546)
[»] chr8 (15 HSPs)
chr8 (253-325)||(12656035-12656107)
chr8 (263-329)||(33100367-33100433)
chr8 (254-329)||(25830133-25830208)
chr8 (260-329)||(6440190-6440259)
chr8 (252-329)||(33539514-33539591)
chr8 (253-329)||(67047-67123)
chr8 (253-329)||(43715983-43716059)
chr8 (260-326)||(35067272-35067338)
chr8 (254-329)||(38675712-38675787)
chr8 (251-329)||(39453201-39453279)
chr8 (259-297)||(40385486-40385524)
chr8 (260-326)||(41639691-41639757)
chr8 (260-329)||(42786551-42786620)
chr8 (253-289)||(36969561-36969597)
chr8 (260-320)||(45405649-45405709)
[»] chr5 (5 HSPs)
chr5 (254-324)||(38293245-38293315)
chr5 (252-324)||(40364682-40364754)
chr5 (255-329)||(32639152-32639226)
chr5 (252-290)||(4088591-4088629)
chr5 (260-326)||(16690611-16690677)
[»] chr6 (9 HSPs)
chr6 (252-329)||(31869176-31869253)
chr6 (258-329)||(33651129-33651200)
chr6 (255-329)||(13423077-13423151)
chr6 (258-329)||(27612983-27613054)
chr6 (251-329)||(1376475-1376553)
chr6 (251-329)||(1384223-1384301)
chr6 (255-295)||(31760176-31760216)
chr6 (252-326)||(28630210-28630284)
chr6 (254-314)||(16337142-16337202)
[»] chr1 (8 HSPs)
chr1 (260-325)||(32831061-32831126)
chr1 (252-329)||(30973661-30973738)
chr1 (253-329)||(12999709-12999785)
chr1 (253-326)||(11947907-11947980)
chr1 (262-329)||(49020301-49020368)
chr1 (260-326)||(29359855-29359921)
chr1 (252-290)||(37554252-37554290)
chr1 (255-329)||(49931662-49931736)
[»] scaffold0053 (1 HSPs)
scaffold0053 (254-329)||(12606-12681)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 37096952 - 37096741
Alignment:
Q  1 cagtggtaattgcaaagaagagaatgaagcttggaatggttaaagcccgatctatgagcagcttattgggacagacagacaacaaggttgtagtcaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37096952 cagtggtaattgcaaagaagagaatgaagcttggaatggttaaagcccgatctatgagcagcttattgggacagacagacaacaaggttgtagtcaatga 37096853  T
Q  101 gaataacaagtaagaccgaaagagtacaataaaattattattacatgtattt------------gaagagtttttaagaatttctattattttggtgcta 188  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||    
T  37096852 gaataacaagtaagaccgaaagagtacaacaaaattattattacatgtatttgaagtttaatttgaagagtttttaagaatttctattattttggtgcta 37096753  T
Q  189 gtattgtcactg 200  Q
    ||||||||||||    
T  37096752 gtattgtcactg 37096741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 37090585 - 37090432
Alignment:
Q  1 cagtggtaattgcaaagaagagaatgaagcttggaatggttaaagcccgatctatgagcagcttattgggacagacagacaacaaggttgtagtcaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  37090585 cagtggtaattgcaaagaagagaatgaagcttggaatggttaaagcccgttctatgatcagcttattgggtcagacagacaacaaggttgtagtcaatga 37090486  T
Q  101 gaataacaagtaagaccgaaagagtacaataaaattattattacatgtatttga 154  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37090485 gaataacaagtaagaccgaaagattacaataaaattattattacatgtatttga 37090432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 254 - 329
Target Start/End: Complemental strand, 31398308 - 31398233
Alignment:
Q  254 gagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  31398308 gagtagtgttatttgaacatttatttgtttgacaaccaaatagacaaccttgtttttacaaagaaaaatatgtatt 31398233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 262 - 329
Target Start/End: Original strand, 41590415 - 41590482
Alignment:
Q  262 ttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||||||| |||||||||||||||| |||  ||||||||||| ||||| ||||||||    
T  41590415 ttatttgaacatctatttgcttgacaaccaaatagacaaccatgtttttacaaggaaaaatatgtatt 41590482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 9363570 - 9363496
Alignment:
Q  253 agagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||||||||||||||||  ||||||||||||||||| |  | |||  ||||||||||||||||||||||||||    
T  9363570 agagtagtgttatttgaacattcatttgtttgacaaccaactgaacaac--tgtttttacaaagaaaagtatgtatt 9363496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 46259980 - 46260054
Alignment:
Q  253 agagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||| || ||||||  | |||| || ||||||||||||  ||||||||||||||||| ||||||||    
T  46259980 agagtagtgttatttcaagatctat--gcttgagaatcaaatagataaccatgtttttacaaagaaaaatatgtatt 46260054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 26018225 - 26018149
Alignment:
Q  253 agagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||| |||||||||| |||||||| |||||||  ||||||| ||   | |||||| |||||||||||||||||    
T  26018225 agagtagttttatttgaacgtctatttgcttgacaattaaatagacaatcatatttttataaagaaaagtatgtatt 26018149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 35457095 - 35457167
Alignment:
Q  253 agagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgta 327  Q
    |||| |||||| ||| |||||||| |||||||||||||||||||| |||  |||||||  ||| |||||||||||    
T  35457095 agagaagtgtttttttaacatctacttgtttgacaaccaaatagacaaccatgttttt--aaaaaaaagtatgta 35457167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 291
Target Start/End: Complemental strand, 48145698 - 48145659
Alignment:
Q  252 aagagtagtgttatttgaacatctatttgtttgacaacca 291  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  48145698 aagagtagtgttatttgaacatcaatttgcttgacaacca 48145659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 44496699 - 44496765
Alignment:
Q  263 tatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||||||| |||||||||||||  |||| || |||  | ||||||||||||||| ||||||||    
T  44496699 tatttgaacatcaatttgtttgacaattaaatggacaaccatatttttacaaagaaaattatgtatt 44496765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 35822868 - 35822937
Alignment:
Q  260 tgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||| ||||| ||||||||||  | || |||  | ||||||||||||||| ||||||||    
T  35822868 tgttatttgaacatcaatttggttgacaaccacgttgacaaccatatttttacaaagaaaaatatgtatt 35822937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 17999562 - 17999640
Alignment:
Q  251 aaagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||| ||||||||    
T  17999562 aaagagtagtgttatttgaacatctatttgtttgacaactaaatagacaaccttgtttttacaaagaaaaatatgtatt 17999640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 251 - 325
Target Start/End: Complemental strand, 29449397 - 29449324
Alignment:
Q  251 aaagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatg 325  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||  ||||||||||||||||||||||    
T  29449397 aaagagtagtgttatttgaacatctatttgcttgacaaccaaatagacaac-atgtttttacaaagaaaagtatg 29449324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 12784282 - 12784355
Alignment:
Q  252 aagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatg 325  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||| |||  ||||||||||||||||| ||||    
T  12784282 aagagtagtgttatttgaacatctatttgcttgacaactaaatagacaaccatgtttttacaaagaaaaatatg 12784355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 329
Target Start/End: Complemental strand, 1040697 - 1040622
Alignment:
Q  254 gagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| ||    |||||||||||||||||||||||||    
T  1040697 gagtagtgttatttgaacatctatttgcttgacaatcaaatagacaatcacgtttttacaaagaaaagtatgtatt 1040622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 42532632 - 42532701
Alignment:
Q  260 tgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||||||||| ||||||||||||||||  ||| |||||||| |||||||| ||||||||    
T  42532632 tgttatttgaacatctatttgcttgacaaccaaatagactactatgtttttataaagaaaaatatgtatt 42532701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 40700382 - 40700336
Alignment:
Q  251 aaagagtagtgttatttgaacatctatttgtttgacaaccaaataga 297  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  40700382 aaagagtagtgttatttgaacatctatttgcttgacaaccaaataga 40700336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 252 - 329
Target Start/End: Complemental strand, 45420321 - 45420244
Alignment:
Q  252 aagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||||| |||    ||||||||||||||| ||||||||    
T  45420321 aagagtagtgttatttgaacatcaatttatttgacaactaaatagacaaccacatttttacaaagaaaaatatgtatt 45420244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 36190906 - 36190976
Alignment:
Q  252 aagagtagtgttatttgaacatctatttgtttgacaaccaaataga-taactttgtttttacaaagaaaag 321  Q
    |||||||||||||||||||||||||||||||||| || |||||| |  |||  ||||||||||||||||||    
T  36190906 aagagtagtgttatttgaacatctatttgtttgataatcaaataaacaaaccatgtttttacaaagaaaag 36190976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 43658596 - 43658674
Alignment:
Q  251 aaagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||| | ||||||||||||||  ||||| |||||||||| || || |||| | ||||||||||||||||||||||||    
T  43658596 aaagagcaatgttatttgaacattaatttggttgacaaccatattgacaactatttttttacaaagaaaagtatgtatt 43658674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 3771556 - 3771480
Alignment:
Q  253 agagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||||||| || ||||| |||||||| |||| || |||    |||||||||||||||||| |||||    
T  3771556 agagtagtgttatttgaacgtcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaagtacgtatt 3771480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 4319891 - 4319815
Alignment:
Q  253 agagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||||||||||||||||||||||  |||||||  ||||||| |    |||||||| |||||||| ||||||||    
T  4319891 agagtagtgttatttgaacatctatttacttgacaattaaatagacagtcatgtttttataaagaaaattatgtatt 4319815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 10472048 - 10472091
Alignment:
Q  251 aaagagtagtgttatttgaacatctatttgtttgacaaccaaat 294  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||    
T  10472048 aaagagtggtgttatttgaatatcaatttgtttgacaaccaaat 10472091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 7084608 - 7084674
Alignment:
Q  260 tgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgt 326  Q
    ||||||||||||||| ||||| |||||||||| || || ||   | |||||||||||||||||||||    
T  7084608 tgttatttgaacatcaatttggttgacaaccacattgacaatcatatttttacaaagaaaagtatgt 7084674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 19843662 - 19843596
Alignment:
Q  260 tgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgt 326  Q
    ||||||||||||||| ||||| ||||||| || || || || | | |||||||||||||||||||||    
T  19843662 tgttatttgaacatcaatttggttgacaatcatattgacaattatatttttacaaagaaaagtatgt 19843596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 329
Target Start/End: Original strand, 40357972 - 40358049
Alignment:
Q  252 aagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||| ||||||  ||||| |||| |||||||| |||||||| ||   | ||||||||||||||| ||||||||    
T  40357972 aagagtagtattatttacacatcaatttatttgacaatcaaatagacaatcatatttttacaaagaaaattatgtatt 40358049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 34592249 - 34592173
Alignment:
Q  253 agagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||||||||||||||||||||||||||||||  |||||||| ||| |||||||||||||||||||||||||||    
T  34592249 agagtagtgttatttgaacatctatttgtttgacagtcaaatagacaacattgtttttacaaagaaaagtatgtatt 34592173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 254 - 329
Target Start/End: Complemental strand, 16479816 - 16479741
Alignment:
Q  254 gagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  16479816 gagtagtgttatttgaacatctatttgcttgacaaccaaatagacaaccttgtttttacaaagaaaaatatgtatt 16479741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 52485659 - 52485581
Alignment:
Q  251 aaagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||| |||||||||||||||||||||||||||||||| ||| || |||  | ||||||||||||||||||||||||    
T  52485659 aaagagttgtgttatttgaacatctatttgtttgacaacctaatggacaaccatatttttacaaagaaaagtatgtatt 52485581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 26772554 - 26772477
Alignment:
Q  253 agagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttac-aaagaaaagtatgtatt 329  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||| || ||||||| |||||||| ||||||||    
T  26772554 agagtagtgttatttgaacatctatttgtttgacatccaaatagacaaccttatttttacaaaagaaaactatgtatt 26772477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 45186436 - 45186514
Alignment:
Q  251 aaagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||||||||||| ||||||| ||||||||||||||||||| || |||  |  |||||||| ||||||||||||||    
T  45186436 aaagagtagtgttattcgaacatcaatttgtttgacaaccaaatggacaaccatacttttacaacgaaaagtatgtatt 45186514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 52089821 - 52089888
Alignment:
Q  253 agagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaa 320  Q
    ||||||||||||||| ||||||||||  ||||||||| ||||||| || ||| |||||||||||||||    
T  52089821 agagtagtgttatttaaacatctattaatttgacaactaaatagacaattttatttttacaaagaaaa 52089888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 37894126 - 37894204
Alignment:
Q  251 aaagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||||||||||||||||||| ||||| |||||||| |||| || |||    ||||||| ||||||||||||||||    
T  37894126 aaagagtagtgttatttgaacatcaatttgcttgacaactaaatggacaaccacatttttaccaagaaaagtatgtatt 37894204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 23868869 - 23868909
Alignment:
Q  257 tagtgttatttgaacatctatttgtttgacaaccaaataga 297  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  23868869 tagtgttatttgaacatctatttgcttgacaaccaaataga 23868909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 49761071 - 49761149
Alignment:
Q  251 aaagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||||| |||||| ||||| |||||||| |||| || |||    ||||||||||||||| ||||||||    
T  49761071 aaagagtagtgttatttcaacatcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaaatatgtatt 49761149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 329
Target Start/End: Complemental strand, 52100446 - 52100369
Alignment:
Q  252 aagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||||||||||| ||||| |||||||  |||| || ||   | ||||||||||||||| ||||||||    
T  52100446 aagagtagtgttatttgaacatcaatttgcttgacaattaaatggacaatcatatttttacaaagaaaaatatgtatt 52100369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 1436994 - 1436928
Alignment:
Q  260 tgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgt 326  Q
    ||||||||||||||| ||||| || ||||||| || || |||  | |||||||||||||||||||||    
T  1436994 tgttatttgaacatcaatttggtttacaaccacattgacaaccatatttttacaaagaaaagtatgt 1436928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 51699036 - 51698970
Alignment:
Q  260 tgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgt 326  Q
    ||||||||||||||| ||||| |||||||||| || || |||  | || ||||||||||||||||||    
T  51699036 tgttatttgaacatcaatttggttgacaaccacattgacaaccatattcttacaaagaaaagtatgt 51698970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 51771349 - 51771386
Alignment:
Q  251 aaagagtagtgttatttgaacatctatttgtttgacaa 288  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  51771349 aaagggtagtgttatttgaacatctatttgcttgacaa 51771386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 254 - 329
Target Start/End: Original strand, 55609052 - 55609127
Alignment:
Q  254 gagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  55609052 gagtagtgttatttgaacatctatttgcttgacaaccaaatagacaaccttgtttttacaaagaaaaatatgtatt 55609127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 193715 - 193641
Alignment:
Q  255 agtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||   ||||||||||||||||| ||||||||    
T  193715 agtagtgttatttgaacatctatttgcttgacaaccaaatagacaatcatgtttttacaaagaaaaatatgtatt 193641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 251 - 325
Target Start/End: Original strand, 36123345 - 36123418
Alignment:
Q  251 aaagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatg 325  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||| |||  ||||||||||||||||||||||    
T  36123345 aaagagtagtgttatttgaacatctatttgcttgacaatcaaatagacaac-atgtttttacaaagaaaagtatg 36123418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 32224110 - 32224048
Alignment:
Q  258 agtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaa 320  Q
    ||||||||| ||||||||||||| |||||||| |||||||||||  |||||||||||||||||    
T  32224110 agtgttattcgaacatctatttgcttgacaactaaatagataaccatgtttttacaaagaaaa 32224048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 329
Target Start/End: Complemental strand, 20118969 - 20118892
Alignment:
Q  252 aagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||| ||||||||||| || |||||||||||||||||| | || ||| || |||||| |||||||| ||||||||    
T  20118969 aagagtactgttatttgaatatttatttgtttgacaaccaattggacaacgttatttttataaagaaaattatgtatt 20118892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 329
Target Start/End: Complemental strand, 48649694 - 48649627
Alignment:
Q  262 ttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||| |||||||||||||| ||||||| |||    |||| |||||||||||||||||||    
T  48649694 ttatttgaacatcaatttgtttgacaactaaatagacaaccacattttaacaaagaaaagtatgtatt 48649627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 1795866 - 1795944
Alignment:
Q  251 aaagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||||||||||||||||||| ||||| || ||||| |||| || |||    ||||||| ||||||||||||||||    
T  1795866 aaagagtagtgttatttgaacatcaatttgcttaacaactaaatggacaaccacatttttaccaagaaaagtatgtatt 1795944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 49585181 - 49585103
Alignment:
Q  251 aaagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||||||||||||||||||  ||||| |||||||| |||| || |||    ||||||| ||||||||||||||||    
T  49585181 aaagagtagtgttatttgaacattaatttgcttgacaactaaatggacaaccacatttttaccaagaaaagtatgtatt 49585103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 50633753 - 50633674
Alignment:
Q  251 aaagagtagtgttatttgaacatctatttgtttgacaaccaaata--gataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||| ||||||||| |||||| ||||||||||||| ||||||  ||||||| | |||||||||| |||| ||||||||    
T  50633753 aaagagttgtgttatttaaacatcaatttgtttgacaatcaaatatggataactatatttttacaaa-aaaaatatgtatt 50633674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Complemental strand, 56271546 - 56271508
Alignment:
Q  251 aaagagtagtgttatttgaacatctatttgtttgacaac 289  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  56271546 aaagagaagtgttatttgaacatccatttgtttgacaac 56271508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 253 - 325
Target Start/End: Complemental strand, 12656107 - 12656035
Alignment:
Q  253 agagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatg 325  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||  ||||||||||||||||||||||    
T  12656107 agagtagtgttatttgaacatctatttgcttgacaaccaaatagacaaccatgtttttacaaagaaaagtatg 12656035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 33100367 - 33100433
Alignment:
Q  263 tatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||||||| |||||||||||||||||||||| ||| || ||||||||||||||||||||||||    
T  33100367 tatttgaacatccatttgtttgacaaccaaatagacaaccttatttttacaaagaaaagtatgtatt 33100433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 329
Target Start/End: Original strand, 25830133 - 25830208
Alignment:
Q  254 gagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||||||||| |||||||| ||||| |||| || |||    ||||||||||||||||||||||||    
T  25830133 gagtagtgttatttgaacatcaatttgtttaacaactaaatggacaaccacatttttacaaagaaaagtatgtatt 25830208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 6440259 - 6440190
Alignment:
Q  260 tgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||| | ||| ||||||||||||| || |||  | ||||||||||||||||||||||||    
T  6440259 tgttatttgaacatcaacttggttgacaaccaaattgacaaccatatttttacaaagaaaagtatgtatt 6440190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 329
Target Start/End: Complemental strand, 33539591 - 33539514
Alignment:
Q  252 aagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||||||||||| ||||| |||||||| |||| || |||    ||||| ||||||||||||||||||    
T  33539591 aagagtagtgttatttgaacatcaatttgcttgacaactaaatggacaaccacattttttcaaagaaaagtatgtatt 33539514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 67047 - 67123
Alignment:
Q  253 agagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||||||||||||||||  ||||| |||||||||||||||| |||    |||||||||||||||  |||||||    
T  67047 agagtagtgttatttgaacattaatttgcttgacaaccaaatagacaaccacatttttacaaagaaaatcatgtatt 67123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 43716059 - 43715983
Alignment:
Q  253 agagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||||||||||||||||| ||||| |||||||| |||| || |||    ||||||| ||||||||||||||||    
T  43716059 agagtagtgttatttgaacatcaatttgcttgacaactaaatggacaaccacatttttaccaagaaaagtatgtatt 43715983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 35067338 - 35067272
Alignment:
Q  260 tgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgt 326  Q
    ||||||||||||||| ||||| |||||||||| || || |||  | |||||||||||||||||||||    
T  35067338 tgttatttgaacatcaatttggttgacaaccacattgacaaccatatttttacaaagaaaagtatgt 35067272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 329
Target Start/End: Complemental strand, 38675787 - 38675712
Alignment:
Q  254 gagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||| ||||||||||||||||||||| ||||| || |||||||| |||  |   |||| |||||||||||||||||    
T  38675787 gagttgtgttatttgaacatctatttatttgataatcaaatagacaaccataactttaaaaagaaaagtatgtatt 38675712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 39453201 - 39453279
Alignment:
Q  251 aaagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||| | ||||||||||||||| ||||| |||||||||| || || ||   | ||||||||||||||| ||||||||    
T  39453201 aaagagcaatgttatttgaacatcaatttgattgacaaccacattgacaatcatatttttacaaagaaaattatgtatt 39453279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 297
Target Start/End: Complemental strand, 40385524 - 40385486
Alignment:
Q  259 gtgttatttgaacatctatttgtttgacaaccaaataga 297  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  40385524 gtgttatttgaacatcaattagtttgacaaccaaataga 40385486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 41639691 - 41639757
Alignment:
Q  260 tgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgt 326  Q
    ||||||||||||||| ||||| ||||||||||  | || |||  | |||||||||||||||||||||    
T  41639691 tgttatttgaacatcaatttggttgacaaccacgttgacaaccatatttttacaaagaaaagtatgt 41639757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 42786551 - 42786620
Alignment:
Q  260 tgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||| | ||| ||||||||||||| || ||   || |||||||||||||| ||||||||    
T  42786551 tgttatttgaacatcaacttggttgacaaccaaattgacaatcatgattttacaaagaaaaatatgtatt 42786620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 36969561 - 36969597
Alignment:
Q  253 agagtagtgttatttgaacatctatttgtttgacaac 289  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  36969561 agagttgtgttatttgaacatccatttgtttgacaac 36969597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 45405709 - 45405649
Alignment:
Q  260 tgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaa 320  Q
    ||||||||||||||| || || |||||||||| || || |||| | |||||||||||||||    
T  45405709 tgttatttgaacatcaatgtgattgacaaccacatggacaactatatttttacaaagaaaa 45405649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 254 - 324
Target Start/End: Original strand, 38293245 - 38293315
Alignment:
Q  254 gagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtat 324  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||   |||||||||||||||||||||    
T  38293245 gagtagtgttatttgaacatctatttgcttgacaaccaaatagacaatcatgtttttacaaagaaaagtat 38293315  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 252 - 324
Target Start/End: Complemental strand, 40364754 - 40364682
Alignment:
Q  252 aagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtat 324  Q
    |||| |||||||||||||||||||||||| ||||||| ||||||||||||  |||||||| ||||||||||||    
T  40364754 aagaatagtgttatttgaacatctatttgcttgacaatcaaatagataaccatgtttttagaaagaaaagtat 40364682  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 32639226 - 32639152
Alignment:
Q  255 agtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||||||||||||||  |||||| |||||||| ||  || ||||||||||||||||||||||||    
T  32639226 agtagtgttatttgaacatctatttgcatgacaatcaaatagacaatcttatttttacaaagaaaagtatgtatt 32639152  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 290
Target Start/End: Complemental strand, 4088629 - 4088591
Alignment:
Q  252 aagagtagtgttatttgaacatctatttgtttgacaacc 290  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  4088629 aagagttgtgttatttgaacatctatttttttgacaacc 4088591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 16690677 - 16690611
Alignment:
Q  260 tgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgt 326  Q
    ||||||||||| ||| ||||| |||||||||| || || |||  | |||||||||||||||||||||    
T  16690677 tgttatttgaatatcaatttggttgacaaccacattgacaaccatatttttacaaagaaaagtatgt 16690611  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 252 - 329
Target Start/End: Complemental strand, 31869253 - 31869176
Alignment:
Q  252 aagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| |   |||||||||||||| ||| ||||||||    
T  31869253 aagagtagtgttatttgaacatctatttgcttgacaatcaaatagacactcttgtttttacaaaggaaaatatgtatt 31869176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 329
Target Start/End: Complemental strand, 33651200 - 33651129
Alignment:
Q  258 agtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||||| ||||||||||||| |||||||| |||  | ||||||||||||||| ||||||||    
T  33651200 agtgttatttgaacatccatttgtttgacaatcaaatagacaaccatatttttacaaagaaaattatgtatt 33651129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 13423151 - 13423077
Alignment:
Q  255 agtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||||||||||||||| |||| |||||||||||| | || |||| | ||||||||||||||| ||||||||    
T  13423151 agtagtgttatttgaacatccatttatttgacaaccaagtggacaactatatttttacaaagaaaaatatgtatt 13423077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 329
Target Start/End: Complemental strand, 27613054 - 27612983
Alignment:
Q  258 agtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||||||||||||||||||| ||||| || |||  | | ||||||||||||| ||||||||    
T  27613054 agtgttatttgaacatctatttgtttgacaatcaaatggacaaccatatgtttacaaagaaaaatatgtatt 27612983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 1376553 - 1376475
Alignment:
Q  251 aaagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||||||||||||||||||| ||||| |||||||| |||| || |||    ||||||||||||||| ||||||||    
T  1376553 aaagagtagtgttatttgaacatcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaaatatgtatt 1376475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 1384301 - 1384223
Alignment:
Q  251 aaagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||||||||||||||||||| ||||| |||||||| |||| || |||    ||||||||||||||| ||||||||    
T  1384301 aaagagtagtgttatttgaacatcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaaatatgtatt 1384223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 31760176 - 31760216
Alignment:
Q  255 agtagtgttatttgaacatctatttgtttgacaaccaaata 295  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  31760176 agtagtgttatttgaacatccatttgtttgacaaccaaata 31760216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 326
Target Start/End: Complemental strand, 28630284 - 28630210
Alignment:
Q  252 aagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgt 326  Q
    ||||||| |||||| ||||||||||||||| ||||||| ||||||| |||  | |||||||||| ||||| ||||    
T  28630284 aagagtaatgttatatgaacatctatttgtgtgacaactaaatagacaaccatatttttacaaataaaagcatgt 28630210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 16337202 - 16337142
Alignment:
Q  254 gagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaa 314  Q
    ||||||||||||||||||||| ||||  |||||||||||||||| |||  | |||||||||    
T  16337202 gagtagtgttatttgaacatccatttaattgacaaccaaatagacaaccatatttttacaa 16337142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 325
Target Start/End: Original strand, 32831061 - 32831126
Alignment:
Q  260 tgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatg 325  Q
    |||| ||||||||||||||||  ||||||||||||||| |||  ||||||||||||||||||||||    
T  32831061 tgttgtttgaacatctatttgcctgacaaccaaatagacaaccatgtttttacaaagaaaagtatg 32831126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 329
Target Start/End: Complemental strand, 30973738 - 30973661
Alignment:
Q  252 aagagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||||||||||||| ||||| |||||||| |||| || ||     ||||||||||||||||||||||||    
T  30973738 aagagtagtgttatttgaacatcaatttgcttgacaactaaatggacaatcacatttttacaaagaaaagtatgtatt 30973661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 12999709 - 12999785
Alignment:
Q  253 agagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||||||||||||||||| ||||| |||||||| |||| || |||    ||||||||||||||| ||||||||    
T  12999709 agagtagtgttatttgaacatcaatttgcttgacaactaaatggacaaccacatttttacaaagaaaaatatgtatt 12999785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 326
Target Start/End: Complemental strand, 11947980 - 11947907
Alignment:
Q  253 agagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgt 326  Q
    |||||| |||||| ||||||||||||||| ||||||| ||||||| |||  | |||||||||| ||||| ||||    
T  11947980 agagtaatgttatatgaacatctatttgtgtgacaactaaatagacaaccatatttttacaaataaaagcatgt 11947907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 329
Target Start/End: Original strand, 49020301 - 49020368
Alignment:
Q  262 ttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    ||||||||||||| ||||| ||||||||||||| || |||  | ||||||||||||||| ||| ||||    
T  49020301 ttatttgaacatcaatttggttgacaaccaaattgacaaccatatttttacaaagaaaaatatatatt 49020368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 29359921 - 29359855
Alignment:
Q  260 tgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgt 326  Q
    ||||||||||||||| ||||| |||||||||| || || |||  | |||||| ||||||||||||||    
T  29359921 tgttatttgaacatcaatttgattgacaaccacattgacaaccatatttttataaagaaaagtatgt 29359855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 290
Target Start/End: Original strand, 37554252 - 37554290
Alignment:
Q  252 aagagtagtgttatttgaacatctatttgtttgacaacc 290  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  37554252 aagagtggtgttatttgaacatctaattgtttgacaacc 37554290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 49931736 - 49931662
Alignment:
Q  255 agtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||||||||||||||||| ||||| |||| ||| |||| || |||    ||||| ||||||||||||||||||    
T  49931736 agtagtgttatttgaacatcaatttgcttgataactaaatggacaaccacatttttccaaagaaaagtatgtatt 49931662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 329
Target Start/End: Complemental strand, 12681 - 12606
Alignment:
Q  254 gagtagtgttatttgaacatctatttgtttgacaaccaaatagataactttgtttttacaaagaaaagtatgtatt 329  Q
    |||||| |||||||||||||| ||||| |||||||| |||| || |||    ||||||| ||||||||||||||||    
T  12681 gagtagagttatttgaacatcaatttgcttgacaactaaatggacaaccacatttttaccaagaaaagtatgtatt 12606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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