View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20026_low_16 (Length: 310)
Name: NF20026_low_16
Description: NF20026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20026_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 45024675 - 45024946
Alignment:
| Q |
18 |
gcatgtaatgtaacatactagtaagcctcagaaaattaaaacatactctcatatcatgtgctggaatgaattataataagaaaattgtaactcgnnnnnn |
117 |
Q |
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| T |
45024675 |
gcatgtaatttaacatacttgtaagcctcagaaaattaaaacatactctctaatcatgtgctggactgaattataataataaaattgtaactcgtttttt |
45024774 |
T |
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| Q |
118 |
nnnaatatgcacaattcagtccaaatttgtttatatgccaattcagagggaggattatttagtaatcattgcatttatattatatgcataaatgttttga |
217 |
Q |
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| T |
45024775 |
t--aatatgcacaattcagtccaaatttgtttatatgccaattcagagggaggattatatagtaatcattgcatttatattatatgcataaatgttttga |
45024872 |
T |
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| Q |
218 |
ccagatgggaattactagtgcactggacacattttgtggtcaatcaaatggagcagaacagtaccatatgcttg |
291 |
Q |
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| T |
45024873 |
tcagatgggaattactagtgcactggacacattttgtggtcaatcaaatggagcagaacagtaccatatgcttg |
45024946 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 30437753 - 30437700
Alignment:
| Q |
234 |
agtgcactggacacattttgtggtcaatcaaatggagcagaacagtaccatatg |
287 |
Q |
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| T |
30437753 |
agtgcactagacacattttgtggtcaagcatatggagctcaacagtatcatatg |
30437700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 30471858 - 30471806
Alignment:
| Q |
235 |
gtgcactggacacattttgtggtcaatcaaatggagcagaacagtaccatatg |
287 |
Q |
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| T |
30471858 |
gtgcactagaaacattttgtggtcaatcatatggagcacaaaaataccatatg |
30471806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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