View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20026_low_22 (Length: 255)
Name: NF20026_low_22
Description: NF20026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20026_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 11588115 - 11587879
Alignment:
| Q |
1 |
tcaatttttcttataaaatatttgagattaaaccctaaatccttttggatgtgatatagattcttggaattcatcctgaagataatgcaaagttggatac |
100 |
Q |
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| T |
11588115 |
tcaatttttcttataaaatatttgagattcaaccctaaatccttttggatgtgatatagattctcggaattcatcctgaagataatgcaaagttggatac |
11588016 |
T |
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| Q |
101 |
agttgctgaagcatccatgttaattatgtcaatcatggataaacacattggtccattgaaaagctgtaatattcgacatttaggtatgagttgtgtcaat |
200 |
Q |
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| T |
11588015 |
agttgctgaagcatccatgttaattatgtcaatcatggataaacacattggtccattgaaaagctgtaatattcggcatttaggtatgagttgtgtcaat |
11587916 |
T |
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| Q |
201 |
ggagatgttgtgcgatggatgaagaaactacttgaga |
237 |
Q |
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| T |
11587915 |
ggagatgttgtgcggtggatgaagaaactacttgaga |
11587879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 11581827 - 11581762
Alignment:
| Q |
4 |
atttttcttataaaatatttgagattaaaccctaaatccttttggatgtgatatagattcttggaa |
69 |
Q |
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|||||||| ||||||||| ||||||| | |||||||||||| |||||||||||||||||||||| |
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| T |
11581827 |
atttttctaataaaatatctgagattcatttctaaatccttttcgatgtgatatagattcttggaa |
11581762 |
T |
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