View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20026_low_5 (Length: 492)
Name: NF20026_low_5
Description: NF20026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20026_low_5 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 33630714 - 33630240
Alignment:
| Q |
1 |
aaagaacctagcttggcgtgcaagttaactaattagatgcatttgcatttacgattaatttcacttgtaattacatctacatctagttagttagagtagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
33630714 |
aaagaacctagcttggcgtgcaagttaactaattagatgcatttgcatttacgattaatttcacttgtaattacatttacatctagttagttagagtagt |
33630615 |
T |
|
| Q |
101 |
tactatgagctggcaccaatgtgtatataactacttgtaatgaactatcacaatgtaataaaacacttttcatctttctccaatttggagctttttctct |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
33630614 |
tactatgagctggaaccaatgtgtatataactacttgtaatgaactatcacaatgtaataaaacacttttaatctttctccaatttggagctttttctct |
33630515 |
T |
|
| Q |
201 |
cttcatccatggcggtttattttactttgactaagggtatgaagttggttttctcttggggttttttatccatgagtctaaatttaaaggtgactatgag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33630514 |
cttcatccatggcggtttattttactttgactaagggtatgaagttggttttctcttggggttttttatccatgagtctaaatttaaaggtgactatgag |
33630415 |
T |
|
| Q |
301 |
ctttactttagatgattgtagtgcaagacatcagttgattaatgagatcattgatatcttgggtcaattggagccatgttccttaactcgtgtcttatgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33630414 |
ctttactttagatgattgtagtgcaagacatcagttgattaatgagatcattgatatcttgggtcaattggagccatgttccttaactcgtgtcttatgt |
33630315 |
T |
|
| Q |
401 |
aaagtaaatcaagtgaccaatattttcatctagtatgagttacatatgactagaatttagatagaagttttgagtt |
476 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
33630314 |
aaagtaaatcaagtgaccaatattttc-tctagtatgagttacatatgactagaatttagatagaagtttggagtt |
33630240 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 5550637 - 5550862
Alignment:
| Q |
5 |
aacctagcttggcgtgcaagttaactaattagatgcatttgcatttacgattaatttcacttgtaattacatctacatctagttagttagagtagttact |
104 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
5550637 |
aacctagcttggcgcgcaagttaactaattagatgcatttgcatttatgattaatttcacttgtaattacatttacatctagttagttagagtagttact |
5550736 |
T |
|
| Q |
105 |
atgagctggcaccaatgtgtatataactacttgtaatgaactatcacaatgtaataaaaca-cttttcatctttctccaatttggagctttttctctctt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||| |||| ||||| |||||||||||||||| |||||||| |||||| ||| |
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|
| T |
5550737 |
atgagctggcaccaatgtgtatataactccttgtcatgaactatcacaatctaatgaaacattttttcatctttctccattttggagc-ttttcttcctt |
5550835 |
T |
|
| Q |
204 |
catccatggcggtttattttactttga |
230 |
Q |
| |
|
||||||||| | ||||||||||||||| |
|
|
| T |
5550836 |
catccatggagatttattttactttga |
5550862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 27474376 - 27474510
Alignment:
| Q |
9 |
tagcttggcgtgcaagttaactaattagatgcatttgcatttacgattaatttc-acttgtaattacatctacatctagttagttagagtagttactatg |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||| || ||||| | |||||||| || | ||||||||||||||||| ||| ||| |
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|
| T |
27474376 |
tagcttggcgcgcaagttaactaattagaagcatttgcatttacatttcatttctaattgtaatttcacatgcatctagttagttagaggagt---gatg |
27474472 |
T |
|
| Q |
108 |
agctggcaccaatgtgtatataactacttgtaatgaac |
145 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||||| |
|
|
| T |
27474473 |
agctgacactaatgtgtatataactgaatgtaatgaac |
27474510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 5746940 - 5746822
Alignment:
| Q |
12 |
cttggcgtgcaagttaactaattagatgcatttgcatttacgattaatttc-acttgtaattacatctacatctagttagttagagtagttactatgagc |
110 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||| | ||||| | ||||| || ||||| |||||||||||||||| |||| |||||| |
|
|
| T |
5746940 |
cttggcgcacaagttaactaattagaagcatttgcatttacattccatttctaattgtattttcatctgcatctagttagttagaatagt---gatgagc |
5746844 |
T |
|
| Q |
111 |
tggcaccaatgtgtatataact |
132 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
5746843 |
tggcactaatgtgtatataact |
5746822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 5783899 - 5783781
Alignment:
| Q |
12 |
cttggcgtgcaagttaactaattagatgcatttgcatttacgattaatttc-acttgtaattacatctacatctagttagttagagtagttactatgagc |
110 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||| | ||||| | ||||| || ||||| |||||||||||||||| |||| |||||| |
|
|
| T |
5783899 |
cttggcgcacaagttaactaattagaagcatttgcatttacattccatttctaattgtattttcatctgcatctagttagttagaatagt---gatgagc |
5783803 |
T |
|
| Q |
111 |
tggcaccaatgtgtatataact |
132 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
5783802 |
tggcactaatgtgtatataact |
5783781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 19000325 - 19000202
Alignment:
| Q |
20 |
gcaagttaactaattagatgcatttgcatttacgattaatttc-acttgtaattacatctacatctagttagttagagtagttactatgagctggcacca |
118 |
Q |
| |
|
|||||||||||||||||| | |||||||||| | || ||||| | ||||||| ||| | |||||||||||||||| |||| | ||||||||||| | |
|
|
| T |
19000325 |
gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatttgcatctagttagttagaatagtga---tgagctggcacta |
19000229 |
T |
|
| Q |
119 |
atgtgtatataactacttgtaatgaac |
145 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
19000228 |
atgtgtatataactgaatgtaatgaac |
19000202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 14232153 - 14232276
Alignment:
| Q |
20 |
gcaagttaactaattagatgcatttgcatttacgattaatttc-acttgtaattacatctacatctagttagttagagtagttactatgagctggcacca |
118 |
Q |
| |
|
|||||||||||||||||| | |||||||||| | || ||||| | ||||||| ||||| |||||||||||||||| |||| | ||||||||||| | |
|
|
| T |
14232153 |
gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatctgcatctagttagttagaatagtga---tgagctggcacta |
14232249 |
T |
|
| Q |
119 |
atgtgtatataactacttgtaatgaac |
145 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
14232250 |
atgtgtatataactgaatgtaatgaac |
14232276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 14236927 - 14237050
Alignment:
| Q |
20 |
gcaagttaactaattagatgcatttgcatttacgattaatttc-acttgtaattacatctacatctagttagttagagtagttactatgagctggcacca |
118 |
Q |
| |
|
|||||||||||||||||| | |||||||||| | || ||||| | ||||||| ||||| |||||||||||||||| |||| | ||||||||||| | |
|
|
| T |
14236927 |
gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatctgcatctagttagttagaatagtga---tgagctggcacta |
14237023 |
T |
|
| Q |
119 |
atgtgtatataactacttgtaatgaac |
145 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
14237024 |
atgtgtatataactgaatgtaatgaac |
14237050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 34150890 - 34150974
Alignment:
| Q |
12 |
cttggcgtgcaagttaactaattagatgcatttgcatttacgattaatttc-acttgtaattacatctacatctagttagttaga |
95 |
Q |
| |
|
||||||| |||||||||||||||||| | |||||||||||| || ||||| | |||||||| ||||| |||||||||||||||| |
|
|
| T |
34150890 |
cttggcgcgcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaatttcatctgcatctagttagttaga |
34150974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 34163506 - 34163590
Alignment:
| Q |
12 |
cttggcgtgcaagttaactaattagatgcatttgcatttacgattaatttc-acttgtaattacatctacatctagttagttaga |
95 |
Q |
| |
|
||||||| |||||||||||||||||| | |||||||||||| || ||||| | |||||||| ||||| |||||||||||||||| |
|
|
| T |
34163506 |
cttggcgcgcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaatttcatctgcatctagttagttaga |
34163590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 22840645 - 22840768
Alignment:
| Q |
20 |
gcaagttaactaattagatgcatttgcatttacgattaatttc-acttgtaattacatctacatctagttagttagagtagttactatgagctggcacca |
118 |
Q |
| |
|
|||||||||||||||||| | |||||||||| | || ||||| | ||||||| ||| | |||||||||||||||| |||| | ||||||||||| | |
|
|
| T |
22840645 |
gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatttgcatctagttagttagaatagtga---tgagctggcacta |
22840741 |
T |
|
| Q |
119 |
atgtgtatataactacttgtaatgaac |
145 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
22840742 |
atgtgtatataactgaatgtaatgaac |
22840768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 22845418 - 22845541
Alignment:
| Q |
20 |
gcaagttaactaattagatgcatttgcatttacgattaatttc-acttgtaattacatctacatctagttagttagagtagttactatgagctggcacca |
118 |
Q |
| |
|
|||||||||||||||||| | |||||||||| | || ||||| | ||||||| ||| | |||||||||||||||| |||| | ||||||||||| | |
|
|
| T |
22845418 |
gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatttgcatctagttagttagaatagtga---tgagctggcacta |
22845514 |
T |
|
| Q |
119 |
atgtgtatataactacttgtaatgaac |
145 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
22845515 |
atgtgtatataactgaatgtaatgaac |
22845541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 3973772 - 3973850
Alignment:
| Q |
20 |
gcaagttaactaattagatgcatttgcatttacga-ttaatttcacttgtaattaca-tctacatctagttagttagag |
96 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| | || |||||| |||||||| || | | ||| ||||||||||||| |
|
|
| T |
3973772 |
gcaagttaactaattagatgcatttgtatttacaatttcatttcaattgtaatttcattttgcatttagttagttagag |
3973850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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