View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20026_low_6 (Length: 429)
Name: NF20026_low_6
Description: NF20026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20026_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 413
Target Start/End: Complemental strand, 1149937 - 1149538
Alignment:
| Q |
14 |
gaaaaacatcctagctgtgcaatcactaaggaacacaataatgggagcaaccttaatggccacaacctcaattt-actatgttcaggtctagcagcagtt |
112 |
Q |
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| T |
1149937 |
gaaaaacatcctagctgtgcaatcactaaggaacacaataatgggggcaaccttaatggccacaacctcaattttactatgttcaggtctagcagcagtt |
1149838 |
T |
|
| Q |
113 |
ataagcagcacatatagtgtgaaaaaaccactaaatgatgcaatttatggagcacatggtgaattcatggttgcactaaaatatgtctcactcctcacta |
212 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1149837 |
ataagcagcacatatagtgtgaaaaagccactaaatgatgcaatttatggagcacatggtgaattcatggttgcactaaaatatgtctcactcctcacaa |
1149738 |
T |
|
| Q |
213 |
ttttcctcttctcattcttttgccattcactttcaataagatttattaatcaagtgaacattttaatcaacacaccacaagaccctatgtcacttgtgac |
312 |
Q |
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| T |
1149737 |
ttttcctcttctcattcttttgccattcactttccataaggttcattaatcaagtgaacattttaataaatacaccacaagaccctatgtcacttgtcac |
1149638 |
T |
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| Q |
313 |
accagaatatatatttgaaattttggagaaaggtttcattttgaatgctgttggaaataggcttttctatgctggacttcctttgttgctatggattttt |
412 |
Q |
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| T |
1149637 |
accagaatatatatttgaaattttggagaaagg-ttcattttaaatgctgttggaaataggcttttctatgctggacttcctttgttgctatggattttt |
1149539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 34461583 - 34461707
Alignment:
| Q |
104 |
gcagcagttataagcagcacatatagtgtgaaaaaaccactaaatgatgcaatttatggagcacatggtgaattcatggttgcactaaaatatgtctcac |
203 |
Q |
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| T |
34461583 |
gcagcagtgataagcagcacatacagtgtgaagaagcctctcaatgattccatttatggagctcatagtgaatttatggtagccctaaaatatgtcacac |
34461682 |
T |
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| Q |
204 |
tcctcactattttcctcttctcatt |
228 |
Q |
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|||| ||||| ||| | |||||||| |
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| T |
34461683 |
tcctaactatattcttattctcatt |
34461707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 24450952 - 24451080
Alignment:
| Q |
50 |
aataatgggagcaaccttaatggccacaacctcaatt-tactatgttcaggtctagcagcagttataagcagcacatatagtgtgaaaaaaccactaaat |
148 |
Q |
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|||||||||| ||||| ||||| | ||||| || ||| | |||||| | ||| ||| |||| ||||||| ||||| |||||||| ||||||||| | || |
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| T |
24450952 |
aataatgggaacaaccctaatgtcaacaacatccattctcctatgtgctggtttaggagcaattataagtagcacttatagtgttaaaaaaccaatcaaa |
24451051 |
T |
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| Q |
149 |
gatgcaatttatggagcacatggtgaatt |
177 |
Q |
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|| || ||| |||||||||||||||||| |
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| T |
24451052 |
gaatcagtttttggagcacatggtgaatt |
24451080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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