View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20026_low_7 (Length: 412)
Name: NF20026_low_7
Description: NF20026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20026_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 35723762 - 35723512
Alignment:
| Q |
9 |
cagaacctgt-ggaggatttttcgcaaaggtatggaaaaggttacaacccaaatttgtctcactatgactgtaaactggttggaattgattcaaggataa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35723762 |
cagaacctgttggaggatttttcgcaaaggaatggaaaaggttacaacccaaatttgtctcactatgactgtaaactggttggaattgattcaaggataa |
35723663 |
T |
|
| Q |
108 |
acaacatgtgtgcacttttaaggacagaatcttaggaaatttgcttttgcgggtatttgaagaccaatatgagaatttccaaatatctacatcaaactcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35723662 |
acaacatgtgtgcacttttaaggacagaatcttaggaaatttgcttttgcgggtatttgaagaccaatatgagaatttccaaatatctacatcaaacttc |
35723563 |
T |
|
| Q |
208 |
agatttcactggaattccaaatcttgaaaggttggatcttcaaggctgcat |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35723562 |
agatttcactggaattccaaatcttgaaaggttggatcttcaaggctgcat |
35723512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 185 - 279
Target Start/End: Original strand, 35687237 - 35687331
Alignment:
| Q |
185 |
tccaaatatctacatcaaactccagatttcactggaattccaaatcttgaaaggttggatcttcaaggctgcataaacctggttgaggttcatgc |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
35687237 |
tccaaatatctacatcaaactccagatttcactggaattccaaatcttgaaaagttggatcttgaaggctgcataaacctagttgaggttcatgc |
35687331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 308 - 397
Target Start/End: Complemental strand, 35723510 - 35723420
Alignment:
| Q |
308 |
tgtgacattaaaa-gaagattgcaaaatcttaaatttggtccctttatttggttcattctctcagagaggtgatgcttgtgtagatatatt |
397 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35723510 |
tgtgacattaaaaagaagattgcaaaatcttaaatttggtccctttaattggttcattctctcagagaggtgatgcttgtgtagatctatt |
35723420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 37 - 154
Target Start/End: Original strand, 35685432 - 35685548
Alignment:
| Q |
37 |
gtatggaaaaggttacaacccaaatttgtctcactatgactgtaaactggttggaattgattcaaggataaacaacatgtgtgcacttttaaggacagaa |
136 |
Q |
| |
|
|||||||||| ||||||||| |||||| || || ||||| | |||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| |
|
|
| T |
35685432 |
gtatggaaaaagttacaacctaaattt-tcacattatgatgatgaactggttggaattgattcacggataaataacatgtgttcacttttaaggacagat |
35685530 |
T |
|
| Q |
137 |
tcttaggaaatttgcttt |
154 |
Q |
| |
|
||| |||||||| ||||| |
|
|
| T |
35685531 |
tctgaggaaattcgcttt |
35685548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University