View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20026_low_9 (Length: 366)
Name: NF20026_low_9
Description: NF20026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20026_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 4243892 - 4243559
Alignment:
| Q |
17 |
gtgagagcgatcatgtagagattaatcaaaactttcatccttttttgctttccggaacaaaagttgtcgatggatatgcaaaaatgctcgttacatcggt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243892 |
gtgagagcgatcatgtagagattaatcaaaactttcatccttttttgctttccggaacaaaagttgtcgatggatatgcaaaaatgctcgttacatcggt |
4243793 |
T |
|
| Q |
117 |
tggtatgaacacaacatggggacaaatgatgagttccataagcaatgacatcaacgaagaaacccctttgcaaacaaggttgaataaacttacatcctca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243792 |
tggtatgaacacaacatggggacaaatgatgagttccataagcaatgacatcaacgaagaaacccctttgcaaacaaggttgaataaacttacatcctca |
4243693 |
T |
|
| Q |
217 |
atcggaaaggttggtttggctgtcgcatttttagtccttgttgttctgttgattcgatatttcaccgggaacacaaagactgataacggagttagagagt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243692 |
atcggaaaggttggtttggctgtcgcatttttagtccttgttgttctgttgattcgatatttcaccgggaacacaaagactgataacggagttagagagt |
4243593 |
T |
|
| Q |
317 |
tcaacggtagaaagactagtttcgatgatgtgat |
350 |
Q |
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| T |
4243592 |
tcaacggtagaaagactagtttcgatgatgtgat |
4243559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 6186948 - 6186615
Alignment:
| Q |
17 |
gtgagagcgatcatgtagagattaatcaaaactttcatccttttttgctttccggaacaaaagttgtcgatggatatgcaaaaatgctcgttacatcggt |
116 |
Q |
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||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6186948 |
gtgagagtgatcatgtagagataaatcaaaattttcatccttttttgctttccgggacaaaagttgtcgatggatatgcaaaaatgcttgttacatcggt |
6186849 |
T |
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| Q |
117 |
tggtatgaacacaacatggggacaaatgatgagttccataagcaatgacatcaacgaagaaacccctttgcaaacaaggttgaataaacttacatcctca |
216 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| | || ||||| ||||||||||||||||||||||| || ||||| || |
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| T |
6186848 |
cggtatgaacacaacatggggacaaatgatgagttcgataagcaatgacatcgatgaggaaacacctttgcaaacaaggttgaataagctaacatcatcg |
6186749 |
T |
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| Q |
217 |
atcggaaaggttggtttggctgtcgcatttttagtccttgttgttctgttgattcgatatttcaccgggaacacaaagactgataacggagttagagagt |
316 |
Q |
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|||||||| |||||||||| |||||| ||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||| |||||||||||| | |
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| T |
6186748 |
atcggaaaagttggtttggttgtcgcgtttttagtcctggttgttctcttggttcgatatttcaccgggaatacaaagactgatgccggagttagagaat |
6186649 |
T |
|
| Q |
317 |
tcaacggtagaaagactagtttcgatgatgtgat |
350 |
Q |
| |
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|||| ||||||||||| ||||| ||||||||||| |
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| T |
6186648 |
tcaatggtagaaagacgagttttgatgatgtgat |
6186615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 38358526 - 38358431
Alignment:
| Q |
54 |
tccttttttgctttccggaacaaaagttgtcgatggatatgcaaaaatgctcgttacatcggttggtatgaacacaacatggggacaaatgatgag |
149 |
Q |
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|||||||||| | ||||| |||||||||| ||||||||||| | ||||| || ||||| || || | |||||| ||||||||||||||||||| |
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| T |
38358526 |
tccttttttgttgtccggcgcaaaagttgtggatggatatgctcagatgcttgtaacatctgtgggcaaaaacacatcatggggacaaatgatgag |
38358431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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