View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20027_high_11 (Length: 405)
Name: NF20027_high_11
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 389
Target Start/End: Original strand, 7999828 - 8000213
Alignment:
| Q |
10 |
attattctattcattaacttttttaaagatgctcgcttttgttaatacttaataatgaataatgggtttggtttatgtgatgatgatattgctgtagaaa |
109 |
Q |
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| T |
7999828 |
attattctattcattcacttttttaaagatgctcgcttttgttaatacttaataatgaataatgggtttggtttatgtgatgatgatattgctgtagaaa |
7999927 |
T |
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| Q |
110 |
tgtccttttggagccatcgaaattatcaacttgccaaagaatttggacaaagataccactcatagatatggtcctaatacctttaagcttcacag----- |
204 |
Q |
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| T |
7999928 |
tgtccttttggagccatcgaaattatcaacttgccaaaaaatttggacaaagataccactcatagatatggtcctaatacctttaagcttcacaggtgtg |
8000027 |
T |
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| Q |
205 |
-nnnnnnnnnnnnnnnnacttatgtttttatgtttttaagctttttaatccaatcgaagaattgtaattgtaattgtaggttgccggttcccagaccggg |
303 |
Q |
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| T |
8000028 |
tgtgtgtgtgtgttgtgacttatgtttttatgtttttaagctttttaatccaatcgaagaattgtaattgtaattgcaggttgccggttcccagaccggg |
8000127 |
T |
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| Q |
304 |
gcaagtgcttggtttggttgggacaaatggaattgggaagtccactgcacttaaggttttggctggaaaactcaagcccaacttgg |
389 |
Q |
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| T |
8000128 |
gcaagtgcttggtttggttgggacaaatggaattgggaagtccactgcacttaaggttttggctggaaaactcaagcccaacttgg |
8000213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 31 - 389
Target Start/End: Complemental strand, 7908708 - 7908367
Alignment:
| Q |
31 |
tttaaagatgctcgcttttgttaatacttaataatgaataatgggtttggtttatgtgatgatgatattgctgtagaaatgtccttttggagccatcgaa |
130 |
Q |
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| T |
7908708 |
tttaaagatgctcgcttttgttaataat-aataac-aataatgggtttg-tttatgtgatggtgattttgctgcagagatgtccttttggagccatcgaa |
7908612 |
T |
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| Q |
131 |
attatcaacttgccaaagaatttggacaaagataccactcatagatatggtcctaatacctttaagcttcacagnnnnnnnnnnnnnnnnacttatgttt |
230 |
Q |
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| T |
7908611 |
attatcaaca---ctaaggattttaacaaagatatcactcatagatatggtcctaatacctttatgcttcgcaggtgtgtgtgctgtg--acttatgttt |
7908517 |
T |
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| Q |
231 |
ttatgtttttaagctttttaatccaatcgaagaattgtaattgtaattgtaggttgccggttcccagaccggggcaagtgcttggtttggttgggacaaa |
330 |
Q |
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| T |
7908516 |
ttatgtttt---gctttttattccaatccaagaattgtaattgca------ggttgccggttcccatgccggggcaagtgcttggtttggtcgggacaaa |
7908426 |
T |
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| Q |
331 |
tggaattgggaagtccactgcacttaaggttttggctggaaaactcaagcccaacttgg |
389 |
Q |
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| T |
7908425 |
tggaattgggaagtccactgcacttaagattttggctggaaaactcaagcccaacttgg |
7908367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 263 - 389
Target Start/End: Original strand, 51515180 - 51515306
Alignment:
| Q |
263 |
aattgtaattgtaattgtaggttgccggttcccagaccggggcaagtgcttggtttggttgggacaaatggaattgggaagtccactgcacttaaggttt |
362 |
Q |
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|||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51515180 |
aattataattgtaattgcaggttgccggttcccaggccggggcaagtgcttggtttggttgggacaaatggaattgggaagtcgactgcacttaaggttt |
51515279 |
T |
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| Q |
363 |
tggctggaaaactcaagcccaacttgg |
389 |
Q |
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| T |
51515280 |
tggctggaaaattaaagcccaacttgg |
51515306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 51514984 - 51515109
Alignment:
| Q |
79 |
ggtttatgtgatgatgatattgctgtagaaatgtccttttggagccatcgaaattatcaacttgccaaagaatttggacaaagataccactcatagatat |
178 |
Q |
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| T |
51514984 |
ggtttatgtgatgatgatattgctgtagaaatgtccttttgaagctatccaaattatcaacttgccaaaggatttggacaaagataccactcatagatac |
51515083 |
T |
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| Q |
179 |
ggtcctaatacctttaagcttcacag |
204 |
Q |
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| T |
51515084 |
ggtcctaatacttttaagctacacag |
51515109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 1304493 - 1304386
Alignment:
| Q |
97 |
attgctgtagaaatgtccttttggagccatcgaaattatcaacttgccaaagaatttggacaaagataccactcatagatatggtcctaatacctttaag |
196 |
Q |
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|||| |||||||||||||||||| ||| || | |||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||||| |
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| T |
1304493 |
attggtgtagaaatgtccttttgaagcaattaagattatcaacttgccggagaatttggacaaagaaacaactcatagatatggtcctaatacttttaag |
1304394 |
T |
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| Q |
197 |
cttcacag |
204 |
Q |
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| T |
1304393 |
ctacacag |
1304386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 280 - 370
Target Start/End: Complemental strand, 1304287 - 1304197
Alignment:
| Q |
280 |
taggttgccggttcccagaccggggcaagtgcttggtttggttgggacaaatggaattgggaagtccactgcacttaaggttttggctgga |
370 |
Q |
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| T |
1304287 |
taggttgccgattccgaggccggggaaagtgcttggtttggtagggaaaaatggaattgggaagtccactgcccttaaagttttggctgga |
1304197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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