View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20027_high_13 (Length: 362)
Name: NF20027_high_13
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 15765098 - 15765447
Alignment:
| Q |
1 |
aggtggaaccaaacccaacatttccaccattggtgctgaccaatttgatgattttgaccctaaagaaaaagcacttaagctctcattcttcaattggtgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15765098 |
aggtggaaccaaacccaacatttccaccattggtgctgaccaatttgatgattttgaccctaaagaaaaagcacttaagctctcattcttcaattggtgg |
15765197 |
T |
|
| Q |
101 |
atgtcctacattgtcatggggtcactatttgcatttacagttctagtgtatgtacaagataatgtgagttggactcttggttatgctcttccaacaattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15765198 |
atgtcctacattgtcatggggtcactatttgcatttacaattctagtgtatgtacaagataatgtgagttggactcttggttatgctcttccaacaattg |
15765297 |
T |
|
| Q |
201 |
gccttgcaatatcaatcatcacattcttggcaggaacgcctttttatagacacaaattgattaaagggagtcctttcattagcatggctaaggtatttgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15765298 |
gccttgcaatatcaatcatcacattcttggcaggaacaccattttatagacacaaattgattaaagggagtcctttcattagcatggctaaggtatttgt |
15765397 |
T |
|
| Q |
301 |
ggcagctataagaaaatttgatatagttgttcctaatgaccctaaagaat |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15765398 |
ggcagctataagaaaatttgatatagttgttcctaatgaccctaaagaat |
15765447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 15754414 - 15754763
Alignment:
| Q |
1 |
aggtggaaccaaacccaacatttccaccattggtgctgaccaatttgatgattttgaccctaaagaaaaagcacttaagctctcattcttcaattggtgg |
100 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
15754414 |
aggtgggaccaaacccaacatttcaaccattggtgctgaccagtttgacgattttgaccctaaagaaaaatcacttaagctctcattcttcaactggtgg |
15754513 |
T |
|
| Q |
101 |
atgtcctacattgtcatggggtcactatttgcatttacagttctagtgtatgtacaagataatgtgagttggactcttggttatgctcttccaacaattg |
200 |
Q |
| |
|
||||| | ||||||| | ||||||||||||||||| |||||| ||||||| | |||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
15754514 |
atgtcttgcattgtctttgggtcactatttgcattcacagttatagtgtacattcaagataatgtgggttggactcttggttatgctcttccaactcttg |
15754613 |
T |
|
| Q |
201 |
gccttgcaatatcaatcatcacattcttggcaggaacgcctttttatagacacaaattgattaaagggagtcctttcattagcatggctaaggtatttgt |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||| |
|
|
| T |
15754614 |
gacttgcaatatcaatcatcacattcttggcaggcacacctttttatagacacaaattgattaaagggagtccatttattagcatggctaaggtcattgt |
15754713 |
T |
|
| Q |
301 |
ggcagctataagaaaatttgatatagttgttcctaatgaccctaaagaat |
350 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
15754714 |
ggcagctataaggaaatttgatgcagttgttcctgatgaccctaaagaat |
15754763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 15778763 - 15779079
Alignment:
| Q |
1 |
aggtggaaccaaacccaacatttccaccattggtgctgaccaatttgatgattttgaccctaaagaaaaagcacttaagctctcattcttcaattggtgg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| | || | |||||||||||||||||||||||||||| |
|
|
| T |
15778763 |
aggtggaaccaaacctaacatttccaccattggtgctgaccagtttgatgattttgacccaaaacagaagggacttaagctctcattcttcaattggtgg |
15778862 |
T |
|
| Q |
101 |
atgtcctacattgtcatggggtcactatttgcatttacagttctagtgtatgtacaagataatgtgagttggactcttggttatgctcttccaacaattg |
200 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
15778863 |
atgtcctgcattgtttttgggtcactatttgcattcacagttatagtgtatatacaagataatgtgagttggactcttggttatgctcttcaaacaactg |
15778962 |
T |
|
| Q |
201 |
gccttgcaatatcaatcatcacattcttggcaggaacgcctttttatagacacaaattgattaaagggagtcctttcattagcatggctaaggtatttgt |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| || ||||||||| | | ||| |||| |||||| |||| |
|
|
| T |
15778963 |
gatttgcaatatcaatcatcacattcttggcaggcacacctttctatagacacaaattgctttcagggagtcccattaatagaatggttaaggtcattgt |
15779062 |
T |
|
| Q |
301 |
ggcagctataagaaaat |
317 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
15779063 |
ggcagctataaggaaat |
15779079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 33413111 - 33412822
Alignment:
| Q |
1 |
aggtggaaccaaacccaacatttccaccattggtgctgaccaatttgatgattttgaccctaaagaaaaagcacttaagctctcattcttcaattggtgg |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| |||||||||||||||||| | |||||||||||| ||| ||| || ||||| |||||||||||| |
|
|
| T |
33413111 |
aggtggaaccaaacccaacatctcaaccattggtgcagaccaatttgatgattttcatcctaaagaaaaatcacataaactttcatttttcaattggtgg |
33413012 |
T |
|
| Q |
101 |
atgtcctacattgtcatggggtcactatttgcatttacagttctagtgtatgtacaagataatgtgagttggactcttggttatgctcttccaacaattg |
200 |
Q |
| |
|
|||| ||| || | ||| | || ||||| ||| |||||||| ||| | ||||||||||| ||||||||||||| |||||| | ||||| | | |
|
|
| T |
33413011 |
atgtttagcatcttctttgggaccctttttgctaatactgttctagtttatatccaagataatgttggttggactcttggatatgctttgccaactctag |
33412912 |
T |
|
| Q |
201 |
gccttgcaatatcaatcatcacattcttggcaggaacgcctttttatagacacaaattgattaaagggagtcctttcattagcatggcta |
290 |
Q |
| |
|
| | |||||||||||||| | |||||||| |||||| || |||||||||||||||||| | ||||||| |||||| ||| ||||||| |
|
|
| T |
33412911 |
gattagcaatatcaatcatgatattcttgggaggaacacccttttatagacacaaattgcctgcagggagtactttcactagaatggcta |
33412822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 15728658 - 15728915
Alignment:
| Q |
1 |
aggtggaaccaaacccaacatttccaccattggtgctgaccaatttgatgattttgaccctaaagaaaaagcacttaagctctcattcttcaattggtgg |
100 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| |||||| | ||||| || || || |||||||||||||| |||||| |
|
|
| T |
15728658 |
aggtggaacaaaacctaacatttccactattggtgctgatcaatttgatgagtttgacacaaaagagaagaaacacaaactctcattcttcaactggtgg |
15728757 |
T |
|
| Q |
101 |
atgtcctacattgtcatggggtcactatttgcatttacagttctagtgtatgtacaagataatgtgagttggactcttggttatgctcttccaacaattg |
200 |
Q |
| |
|
|||| | ||| |||| || | || |||||| | ||||| |||| || ||||||||||||| ||||||||||||| ||||| |||||||| ||| |
|
|
| T |
15728758 |
atgttcagcatcttcattggaaccctttttgcaaattcagttttagtctacatacaagataatgttggttggactcttgggtatgcacttccaactcttg |
15728857 |
T |
|
| Q |
201 |
gccttgcaatatcaatcatcacattcttggcaggaacgcctttttatagacacaaatt |
258 |
Q |
| |
|
| ||||||||||| ||||| | ||| |||||||| || || || |||||||| ||||| |
|
|
| T |
15728858 |
gacttgcaatatctatcataatatttttggcaggcacaccattctatagacataaatt |
15728915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 15736448 - 15736734
Alignment:
| Q |
17 |
aacatttccaccattggtgctgaccaatttgatgattttgaccctaaagaaaaagcacttaagctctcattcttcaattggtggatgtcctacattgtca |
116 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| |||||| | ||||| || || ||| ||||||||||||||||||||||||| | ||| ||| |
|
|
| T |
15736448 |
aacatttccactattggtgctgatcaatttgatgagtttgacacaaaagagaagaaacataaactctcattcttcaattggtggatgttcagcatcgtct |
15736547 |
T |
|
| Q |
117 |
tggggtcactatttgcatttacagttctagtgtatgtacaagataatgtgagttggactcttggttatgctcttccaacaattggccttgcaatatcaat |
216 |
Q |
| |
|
| ||| | || ||||| | | || |||| || ||||||||||||| ||||||||||||| ||||| |||||||| |||| |||| |||||| || |
|
|
| T |
15736548 |
ttgggactcttcttgcaaattctgtcttagtctacatacaagataatgttggttggactcttggatatgcacttccaactcttggacttggaatatctat |
15736647 |
T |
|
| Q |
217 |
catcacattcttggcaggaacgcctttttatagacacaaattgattaaagggagtcctttcattagcatggctaaggtatttgtggc |
303 |
Q |
| |
|
||| ||||| |||||||| || | || |||||||| ||||| | ||||||||| |||| || ||||||||||| ||||||| |
|
|
| T |
15736648 |
cataacatttttggcaggcacacaattctatagacataaattacctgcagggagtcccttcactaaaatggctaaggtcattgtggc |
15736734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 39239870 - 39239771
Alignment:
| Q |
1 |
aggtggaaccaaacccaacatttccaccattggtgctgaccaatttgatgattttgaccctaaagaaaaagcacttaagctctcattcttcaattggtgg |
100 |
Q |
| |
|
|||||||||||||||||||||||| || || || ||||||||||||||||| ||||| || ||||| ||| | |||| | || ||||||||||||||| |
|
|
| T |
39239870 |
aggtggaaccaaacccaacatttctactatgggagctgaccaatttgatgactttgatcccaaagagaaatccgataagttgtccttcttcaattggtgg |
39239771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 39261285 - 39261224
Alignment:
| Q |
5 |
ggaaccaaacccaacatttccaccattggtgctgaccaatttgatgattttgaccctaaaga |
66 |
Q |
| |
|
||||| || |||||||||||||||||||| || |||||||||||||| ||||| |||||||| |
|
|
| T |
39261285 |
ggaactaagcccaacatttccaccattggagcagaccaatttgatgagtttgagcctaaaga |
39261224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 32469402 - 32469456
Alignment:
| Q |
1 |
aggtggaaccaaacccaacatttccaccattggtgctgaccaatttgatgatttt |
55 |
Q |
| |
|
||||||||| ||||| || ||||| || |||||||||||||||||||||||||| |
|
|
| T |
32469402 |
aggtggaacaaaaccaaatatttcaacttttggtgctgaccaatttgatgatttt |
32469456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University