View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20027_high_18 (Length: 300)
Name: NF20027_high_18
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 12 - 272
Target Start/End: Complemental strand, 14621731 - 14621469
Alignment:
| Q |
12 |
agagaggaaatgctttttagaaaatgaaataattgtgaaaggtgaaaacattgaattcatgatccattgtcttctttataattccaaaccattagagttt |
111 |
Q |
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| T |
14621731 |
agagaggaaatgctttttagaaaatgaaataattgtgaaaggtgaaaacattgaattcatgatccattgtcttctttataattccaagccattagagttt |
14621632 |
T |
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| Q |
112 |
ggtctttaaatgtgtttttcgttagccattttaatccataaaattagcagcgaaagatatgcataatgatgtttttgcgatgtcaatataactaaggact |
211 |
Q |
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| T |
14621631 |
ggtctttaaatgtgtttttcgttagccattttaatgcataaaattagcagctaaagatatgcataatgatatttttgcaatgccaatataactaaggact |
14621532 |
T |
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| Q |
212 |
ataatgacac--tttcacacatttagatatcaaaacgacatttactccttcgaaaggagttaa |
272 |
Q |
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| T |
14621531 |
ataatgacactgtttcacacatttatatatcaaaatgacatttactcctttgaaaggagttaa |
14621469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 18885464 - 18885412
Alignment:
| Q |
54 |
tgaaaacattgaattcatgatccatt-gtcttctttataattccaaaccatta |
105 |
Q |
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| T |
18885464 |
tgaaaacatagaattcatgatccatttgtcctctttataattccaaaccatta |
18885412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 6668828 - 6668784
Alignment:
| Q |
113 |
gtctttaaatgtgtttttcgttagccattttaatccataaaatta |
157 |
Q |
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| T |
6668828 |
gtcttcaaatgtgtttttcgtttgtcaatttaatccataaaatta |
6668784 |
T |
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