View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20027_high_23 (Length: 272)
Name: NF20027_high_23
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 47804550 - 47804803
Alignment:
| Q |
1 |
tatctacctaaaacaaagcttggtgaacgagttatcgaaacaacctgaaagctttgcgagtagggtggttggaacttttgttagagccagagtagattcc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47804550 |
tatctacctaaaacaaagcttggtgatcgagttatcgaaacaacctgaaagctttgcgagtagggtggttggaacttttgttagagccagagtagattcc |
47804649 |
T |
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| Q |
101 |
aatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaattgcatatagatcttgctagctttttaacgctactttatatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47804650 |
aatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaattgcatatagatcttgctagctttttaacgctactttatatttc |
47804749 |
T |
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| Q |
201 |
tcaatatttggttctatgtatgtactttaaatgattgatcatttctctcgttta |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47804750 |
tcaatatttggttctatgtatgtactttaaatgattgatcatttctcttgttta |
47804803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 47807112 - 47807365
Alignment:
| Q |
1 |
tatctacctaaaacaaagcttggtgaacgagttatcgaaacaacctgaaagctttgcgagtagggtggttggaacttttgttagagccagagtagattcc |
100 |
Q |
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|||||||||||| | ||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47807112 |
tatctacctaaagcgaagcttggtattcgagttatcgaaacagcctgaaagctttgcgagtagggtgattggaacttttgttagagccagagtagattcc |
47807211 |
T |
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| Q |
101 |
aatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaattgcatatagatcttgctagctttttaacgctactttatatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47807212 |
aatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaattgcatatagatcttgctagctttttaacgctactttatatttc |
47807311 |
T |
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| Q |
201 |
tcaatatttggttctatgtatgtactttaaatgattgatcatttctctcgttta |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47807312 |
tcaatatttggttctatgtatgtactttaaatgattgatcatttctcttgttta |
47807365 |
T |
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