View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20027_high_27 (Length: 250)
Name: NF20027_high_27
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_high_27 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 21490595 - 21490346
Alignment:
| Q |
1 |
ctggtttgagctaagggattaaaggagttaaaggttcaaggttcgaatcctagtaaggtgaaatatgctaacataacaattgctaatataattaatgttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21490595 |
ctggtttgagctaagggattaaaggagttaaaggttcaaggttcgaatcctagtaaggtgaaatatgctaacataacaattgctaatataattaatgttg |
21490496 |
T |
|
| Q |
101 |
gaagtagaagttgagggaaaaatatgaataccctctactgcatggactttttatggttgtagatggacagtatgatccagctgaacagaatacctcacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21490495 |
gaagtagaagttgagggaaaaatatgaataccctctactgcatggactttttatggttgtagatggacagtatgatcctgctgaacagaatacctcacca |
21490396 |
T |
|
| Q |
201 |
ctacttgtaatgtccgcccaaatatctgctcctccgcaactatgattatc |
250 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21490395 |
ctacttgtaatgtctgcccaaatatcggctcctccgcaactatgattatc |
21490346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28485961 - 28485998
Alignment:
| Q |
1 |
ctggtttgagctaagggattaaaggagttaaaggttca |
38 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
28485961 |
ctggtttgagctaagtgattaaaggagttaagggttca |
28485998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 48323892 - 48323851
Alignment:
| Q |
10 |
gctaagggattaaaggagttaaaggttcaaggttcgaatcct |
51 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
48323892 |
gctaagggtttaaaggagttaaaggtccagggttcgaatcct |
48323851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 5446380 - 5446329
Alignment:
| Q |
6 |
ttgagctaagggattaaaggagttaaaggttcaaggttcgaatcctagtaagg |
58 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5446380 |
ttgagctaaatgattaaaggagttaaag-ttcaaggttcgaatcctagtaagg |
5446329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 18722215 - 18722289
Alignment:
| Q |
6 |
ttgagctaagggattaaaggagttaaaggttcaaggttcgaatcctagtaaggtgaaatatgctaacataacaatt |
81 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||| ||||||| | |||| || ||||||||||||||||| |
|
|
| T |
18722215 |
ttgagctaagggattaaag-agttaaaggttcagggtttgaatcctggcaagggagaaaatgctaacataacaatt |
18722289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University