View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20027_high_28 (Length: 249)
Name: NF20027_high_28
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 14621850 - 14621981
Alignment:
| Q |
107 |
ttaagcatgcatgttcaaaatgaagaaaacaaattcacattgcaattgatatactgttcttagatctggaatttgttttctgagaagacacatgtggtca |
206 |
Q |
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| T |
14621850 |
ttaagcatgcatgttcaaaatgaagaaaacaaattcacattgcaattgatatactgttcttagatctggaatttgttttctgtgaagacacatggggtca |
14621949 |
T |
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| Q |
207 |
cagcacaatgcaatgttgttatcattattcat |
238 |
Q |
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| T |
14621950 |
cagcacaatgcaatgttattatcattattcat |
14621981 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 14621742 - 14621803
Alignment:
| Q |
1 |
catttgtggatcacatgccatgtgtccctnnnnnnnngccgatctaattacgcaccaaatgcc |
63 |
Q |
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| T |
14621742 |
catttgtggatcacatgccatgtgtccct-aaaaaaagccgatctaattacgcaccaaatgcc |
14621803 |
T |
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