View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20027_high_5 (Length: 462)
Name: NF20027_high_5
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 35669608 - 35670051
Alignment:
| Q |
1 |
tgcataagacgaaagcatgaaatgaatacgaggatacggcacaagattggtctggaactcagtaatatcaacattaatagcaccatcaaacctcaacgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35669608 |
tgcataagacgaaagcatgaaatgaatacgaggatacggcacaagattggtctggaactcagtaatatcaacattaatagcaccatcaaacctcaacgag |
35669707 |
T |
|
| Q |
101 |
gttgtgagggatgatatgatctgtgatatcaacctgttcaagttggtataagttggcctctcaatatcaagagatctcctacaaatgtcgtagatcgcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35669708 |
gttgtgagggatgatatgatctgtgatatcaacctgttcaagttggtataagttggcctctcaatatcaagagatctcctacaaatgtcgtagatcgcct |
35669807 |
T |
|
| Q |
201 |
cgttatccaagagcaccgccacatcagtgtgctcgagaagagaatgtgtcgatagaacactgttgtatggttccacaacagcagttgaaacctagatcca |
300 |
Q |
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| T |
35669808 |
cgttatccaagagcaccgccacatcagtgtgctcgagaagagaatgtgtcgatagaacactgttgtatggttccacaacagcagttgaaacctagatcca |
35669907 |
T |
|
| Q |
301 |
aaaataacagttcaccattgcaaacagaaaaacaaatcaactactatgatctatacatcaatcaacaccaatatttacatcaacatgatttaaacatgaa |
400 |
Q |
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| T |
35669908 |
aaaataacagttcaccattgcaaacagaaaaacaaatcaactactatgatctatacatcaataaacacaaatatttacatcaacatgatttaaacatgaa |
35670007 |
T |
|
| Q |
401 |
acattgcaataacaattaacagtattaaagatcttgaatgttgt |
444 |
Q |
| |
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| T |
35670008 |
acattgcaataacaattaacagtattaaagatcttgaatgttgt |
35670051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 2 - 294
Target Start/End: Complemental strand, 33270467 - 33270175
Alignment:
| Q |
2 |
gcataagacgaaagcatgaaatgaatacgaggatacggcacaagattggtctggaactcagtaatatcaacattaatagcaccatcaaacctcaacgagg |
101 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| || || || || |||||||||||||||| || || || || ||||| ||||| ||||| || | |
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| T |
33270467 |
gcataagacgaaagcataaaatggatacgaggatatggaaccaggttagtctggaactcagtaacgtccacgttgattgcaccgtcaaatctcaaggaag |
33270368 |
T |
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| Q |
102 |
ttgtgagggatgatatgatctgtgatatcaacctgttcaagttggtataagttggcctctcaatatcaagagatctcctacaaatgtcgtagatcgcctc |
201 |
Q |
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| T |
33270367 |
ttgtcaaggaagagataacttgagaaatcaaacggttcaggttggtataagttggcctttctatatctaatgattttctgcatatatcatatattgcttc |
33270268 |
T |
|
| Q |
202 |
gttatccaagagcaccgccacatcagtgtgctcgagaagagaatgtgtcgatagaacactgttgtatggttccacaacagcagttgaaaccta |
294 |
Q |
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| T |
33270267 |
attgtccaaaagtacaaccacatcagtgtgctcaagaagagaatgagtggacagaacactgttgtaaggttcaacaactgcagtagataccta |
33270175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 40377406 - 40377500
Alignment:
| Q |
2 |
gcataagacgaaagcatgaaatgaatacgaggatacggcacaagattggtctggaactcagtaatatcaacattaatagcaccatcaaacctcaa |
96 |
Q |
| |
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|||||||| ||||||||||| ||||| | |||||| ||||| || || |||||||| ||||||| ||||||||| | ||||| ||||| ||||| |
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| T |
40377406 |
gcataagatgaaagcatgaagtgaatcctaggatatggcaccaggttagtctggaattcagtaacatcaacattcaaggcaccgtcaaatctcaa |
40377500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 47928103 - 47928197
Alignment:
| Q |
2 |
gcataagacgaaagcatgaaatgaatacgaggatacggcacaagattggtctggaactcagtaatatcaacattaatagcaccatcaaacctcaa |
96 |
Q |
| |
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||||| || |||||||||||||| || | ||||| || || | ||||||||||| ||||| | ||||||||| | |||||||||||||||||| |
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| T |
47928103 |
gcatatgaagaaagcatgaaatggattctgggatatgggaccaagttggtctggaattcagtcacatcaacattgagagcaccatcaaacctcaa |
47928197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 10032143 - 10032183
Alignment:
| Q |
5 |
taagacgaaagcatgaaatgaatacgaggatacggcacaag |
45 |
Q |
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| T |
10032143 |
taagacgaaagcatgaaatggattcgaggatacggtacaag |
10032183 |
T |
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