View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20027_high_8 (Length: 423)
Name: NF20027_high_8
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_high_8 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 47804557 - 47804135
Alignment:
| Q |
1 |
ggtagataagcttgatattattggcattaatggatgcaaaacatccaggttttaatggatgcaaaacatccaagttggacaaccggctttccagacttgt |
100 |
Q |
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| T |
47804557 |
ggtagataagcttgatattattggcattaatggatgcaaaacatccaggttttaatggatgcaaaacatccaagttggacaaccggctttccagacatgt |
47804458 |
T |
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| Q |
101 |
ctgatcatcgatatccttgtctgccgaacaannnnnnnnnncatcgtgattttcctttccagatgaatcatctgaatttttcgcaatgtgaaactcgagg |
200 |
Q |
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| T |
47804457 |
ctgatcatcgatatccttgtctgccgaacaattttttttttcatcgtgattttcctttctagatgaatcatctgaatttttcgcaatgtgaaactcgagt |
47804358 |
T |
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| Q |
201 |
agagaatatatctgagacttcaacacagctttctttttaaatataggaaacaacttgtcatcagggaggaatttcctcttgtctttgggatggtaaagat |
300 |
Q |
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| T |
47804357 |
agagaatatatctgagacttcaacacagctttctttttaaatataggaaacaacttgtcatcagggaggaatttcctcttgtctttgggatggtaaagat |
47804258 |
T |
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| Q |
301 |
ttttctccttaatgtattcatatatgagagatcttattccccattgcatcattggttcggtattgtatctccctatggatgcaaggaagctagatagagg |
400 |
Q |
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| T |
47804257 |
ttttctccttaatgtattcatatatgagagatcttattccccattgcatcattggttcggttttgtatctccctatggatgcaaggaagctagatagagg |
47804158 |
T |
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| Q |
401 |
tcttgatgcccatccaacaaatt |
423 |
Q |
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| T |
47804157 |
tcttgatgcccatccgacaaatt |
47804135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 144 - 423
Target Start/End: Complemental strand, 47806958 - 47806679
Alignment:
| Q |
144 |
tcgtgattttcctttccagatgaatcatctgaatttttcgcaatgtgaaactcgaggagagaatatatctgagacttcaacacagctttctttttaaata |
243 |
Q |
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| T |
47806958 |
tcgtgattttcctttccagccgaatcaacagatctttccgcaatatgaaacttgagtaggggatatatcttgtactttgacatgactttctttttaaaga |
47806859 |
T |
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| Q |
244 |
taggaaacaacttgtcatcagggaggaatttcctcttgtctttgggatggtaaagatttttctccttaatgtattcatatatgagagatcttattcccca |
343 |
Q |
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| T |
47806858 |
ttggaaacaacttatcgtcagggaagaattttttcttgtctttatgatgataaagatttttctctgtaatgtattcaaacatgagagattttacatccct |
47806759 |
T |
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| Q |
344 |
ttgcatcattggttcggtattgtatctccctatggatgcaaggaagctagatagaggtcttgatgcccatccaacaaatt |
423 |
Q |
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| T |
47806758 |
tcgcatcattggttcggtttcatatctccctatggatgccaggaaactagagagaggtcctgatgcccatccaacgaatt |
47806679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 47807119 - 47807066
Alignment:
| Q |
1 |
ggtagataagcttgatattattggcattaatggatgcaaaacatccaggtttta |
54 |
Q |
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| T |
47807119 |
ggtagataagcttgatatttttggcattaatcgatgcaaaacatccaggtttta |
47807066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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