View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20027_low_1 (Length: 608)
Name: NF20027_low_1
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Complemental strand, 8937739 - 8937290
Alignment:
| Q |
17 |
taaaccattgctgaatcttccagttggttgatttccaccaccaaagtctttaccataaggtggaaagttgcacttgaacacagtgttgatgatgtagttg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8937739 |
taaaccattgctgaatcttccagttggttgatttccaccaccaaagtctttaccataaggtggaaagttgcacttgaacacagtgttgatgatgtagttg |
8937640 |
T |
|
| Q |
117 |
ttattacctgagtcaactattgagtcaccaaaggcaatgaatgctggaactgtttcattgtttggtagattcacagcattaccataatgtagagagacaa |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8937639 |
ttattacctgagtcaactatagagtcaccaaaggcaatgaatgctggaactgtttcattgtttggtagattcacagcattaccataatgtagagagacaa |
8937540 |
T |
|
| Q |
217 |
ggattatagcaagagagaaaagagtgacaagaggtgattgaaaaagaaggttttgaaagagcaacttcatgtttttgtagaataatatgatgagcttgac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8937539 |
ggattatagcaagagagaaaagagtgacaagaggtgattgaaaaagaaggttttgaaagagcaacttcatgtttttgtagaataatatgatgagcttgac |
8937440 |
T |
|
| Q |
317 |
tacaccttattggaacttcactttagcttagtgatataaaccttttataaaccttaacataaattctgtgataccaaccccagataaaatgtttaattta |
416 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8937439 |
tacacc----------------ttagcttagtgatataaaccttttataaaccttaacataaattatgtgataccaaccccagataaaatgtttaattta |
8937356 |
T |
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| Q |
417 |
ctggattttaatcctttaagatattgaatatgcatctaaaaatatattgaatacacaatttttaaa |
482 |
Q |
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| T |
8937355 |
ctggattttaatcctttaagatattgaatatgcatctaaaaatatattgaatacacaatttttaaa |
8937290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 17 - 371
Target Start/End: Complemental strand, 8945924 - 8945571
Alignment:
| Q |
17 |
taaaccattgctgaatcttccagttggttgatttccaccaccaaagtctttaccataaggtggaaagttgcacttgaacacagtgttgatgatgtagttg |
116 |
Q |
| |
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|||||||||||| || ||||| |||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| |||| ||| |||||| |
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| T |
8945924 |
taaaccattgctaaaccttcctgttggttgatttccactaccaaagtctctaccataaggtagaaagttgcacttgacataagtgccaatg---tagttg |
8945828 |
T |
|
| Q |
117 |
ttattacctgagtcaactattgagtcaccaaaggcaatgaatgctggaactgtttcattgtttggtagattcacagcattaccataatgtagagagacaa |
216 |
Q |
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|||||||||||||||||||| ||||| ||||| |||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
8945827 |
ttattacctgagtcaactatagagtctccaaacacaatgagtgctggaattgtttcattgtttggtagattcacagcattaccacaatgtagagagataa |
8945728 |
T |
|
| Q |
217 |
ggattatagcaagagagaaaagagtgacaagaggtgattgaaaaagaaggttttgaaagagcaacttcatgtttttgtagaataatatgatgagct--tg |
314 |
Q |
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|||| ||| ||||||||||||| | ||||||||||||||||||||||| |||||||| || || ||||||||||||||||||||||||| | ||| || |
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| T |
8945727 |
agattgtagtaagagagaaaagattaacaagaggtgattgaaaaagaagattttgaaatagaaatttcatgtttttgtagaataatatgaagggcttgtg |
8945628 |
T |
|
| Q |
315 |
actacaccttattggaacttcactttagcttagtgatataaaccttttataaacctt |
371 |
Q |
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||||||| | |||||||||| | ||||| |||||| | ||| ||||||||| ||||| |
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| T |
8945627 |
actacacttgattggaactttattttagtttagtggtgtaagccttttatatacctt |
8945571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 482 - 602
Target Start/End: Complemental strand, 8937250 - 8937130
Alignment:
| Q |
482 |
acatcccttcaaaaaattatttcttacatattcttaagaaaagtataccattatgtttgtttaaaattattggggaaaaagttgtatttctatctcttct |
581 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8937250 |
acatcccttcaaaaaaatatttcttacatattcttaagaaaagtataccattacgtttgtttaaaattattggggaaaaagttgtatttctatctcttct |
8937151 |
T |
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| Q |
582 |
attaaaaatgatattcttcga |
602 |
Q |
| |
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|||||||||||| |||||||| |
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| T |
8937150 |
attaaaaatgattttcttcga |
8937130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 31797598 - 31797675
Alignment:
| Q |
106 |
tgatgtagttgttattacctgagtcaactattgagtcaccaaaggcaatgaatgctggaactgtttcattgtttggta |
183 |
Q |
| |
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|||| ||||||||||| |||| |||||||| ||||||||||| ||| | |||||| ||||||||||||||||||| |
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| T |
31797598 |
tgatatagttgttatttcctggatcaactatagagtcaccaaatacaaaaactgctggcactgtttcattgtttggta |
31797675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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