View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20027_low_10 (Length: 417)
Name: NF20027_low_10
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 393
Target Start/End: Original strand, 1612627 - 1613026
Alignment:
| Q |
15 |
agcacagaaataacaaagcaactaagagattacaagaaagcactgacgaggattaagcttccgaaaaagatagtcgaaatcaaaagtaatgaattttgat |
114 |
Q |
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||||||| |||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1612627 |
agcacaggaataacaaagcaactaagagattacaggcaagcattgacgaggattaagcttccgaaaaagatagtcgaaatcaaaagtaatgaattttgat |
1612726 |
T |
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| Q |
115 |
ttcatctaccaaaaacaatgaagcttgatcttctc---------------------ctctttttgctggaaaaatccggcaattgtgttccttccaaata |
193 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1612727 |
ttcatctatcaaaaacaatgaagcttgatcttctcacacaaagtattcaaatttacctctttttgctggaaaaatccggcaattgcattccttccaaata |
1612826 |
T |
|
| Q |
194 |
attcagaccgtgcataaccaatcaatgttcaacaaagaccgctcccttttcgaatagtcacataaagtggtaaattgcaaaagatgtttgttaatagaac |
293 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1612827 |
attcagaccgtgcataaccaatcaatgttcaacaaaggccactcccttttcaaatagtcacataaagtggtaaattgcaaaagatgtttgttaatagaac |
1612926 |
T |
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| Q |
294 |
cttgacaaactactgtgaaacctaaccaattagccaccaaggaccatggtctacgaaaaaatcacatcttgcaaataaaaatgatctctatcttccaacg |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1612927 |
cttgacaaactactgtgaaacctaaccaattagccaccaaggaccatggtctacaaaaaaatcacatcttgcaaataaaaatgatctctatcttccaacg |
1613026 |
T |
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