View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20027_low_13 (Length: 391)

Name: NF20027_low_13
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20027_low_13
NF20027_low_13
[»] chr1 (12 HSPs)
chr1 (1-365)||(12956037-12956401)
chr1 (1-265)||(12914436-12914702)
chr1 (1-226)||(12942623-12942848)
chr1 (6-253)||(12921771-12922017)
chr1 (1-233)||(12885313-12885544)
chr1 (1-205)||(12950281-12950485)
chr1 (1-235)||(12992257-12992491)
chr1 (289-365)||(12921685-12921761)
chr1 (106-230)||(13000911-13001035)
chr1 (1-160)||(12893674-12893833)
chr1 (4-162)||(12997890-12998047)
chr1 (270-336)||(12950574-12950640)
[»] chr8 (1 HSPs)
chr8 (1-43)||(14069385-14069427)


Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 12956037 - 12956401
Alignment:
Q  1 gaaaagaggatgtcatggaaatattgtggagttgaaaatggggagaaagtcatggttcgtaaaagtgaactattacgaaagtatttgtggctgtaggttt 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  12956037 gaaaagaggatgtcatgaaaatattgtggagttgaaaatggggagaaagtcatggttcgtaaaagtgaactattacgagagtatttgtggctgtaggttc 12956136  T
Q  101 agtaaaggttggagaaagttcatgaaagaatgcaaagtggagattggagatacttgtctccttaaattgattgatgaacgagaatttgtgtttgatgttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  12956137 agtaaaggttggagaaagttcatgaaagaatgcaaagtggagattggagatacttgtctccttaagttgattgatgaacgaaaatttgtgtttgatgttt 12956236  T
Q  201 caattgcaggaaagaatccattagctgtttgttctccaaggtactaataactagatgtttagttgaatccattgtattctattattgcaaacatctgtat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12956237 caattgcaggaaagaatccattagctgtttgttctccaaggtactaataactagatgtttagttgaatccattgtattctattattgcaaacatctgtat 12956336  T
Q  301 ttcattcgaatatatgctgtatcgtgtcagcctttgaactttttccctatggattgtttgtaatg 365  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12956337 ttcattcgaatataagctgtatcgtgtcagcctttgaactttttccctatggattgtttgtaatg 12956401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 12914702 - 12914436
Alignment:
Q  1 gaaaagaggatgtcatggaaatattgtggagttgaaaatggggagaaagtcatggttcgtaaaagtgaactattacgaaagtatttgtggctgtaggttt 100  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||| || | |||    ||| ||||||||||||||||     
T  12914702 gaaaaaaggatgtaatgaaaatattgtggagttgaaaatggggagaaagtcatggtttgtaaaagtcaatttttatcggagtctttgtggctgtaggttc 12914603  T
Q  101 agtaaaggttggagaaagttcatgaaagaatgcaaagtggagattggagatacttgtctccttaaattgattgatgaacgagaatttgtgtttgatgttt 200  Q
    ||||||||||||||| | || ||||||| | ||||||||||||||||||||||||||||  |||| || ||||||||  |  ||||||||||||||||||    
T  12914602 agtaaaggttggagacaatttatgaaagcaggcaaagtggagattggagatacttgtctttttaagttaattgatgagaggaaatttgtgtttgatgttt 12914503  T
Q  201 caattgcaggaaagaatccattagctgtttgttctccaag--gtactaataactagatgtttagttg 265  Q
    |||||| |||||||||| ||| |||||||||||||  |||  |||||||||||||||||||||||||    
T  12914502 caattgtaggaaagaatacataagctgtttgttctttaaggtgtactaataactagatgtttagttg 12914436  T

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Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 12942623 - 12942848
Alignment:
Q  1 gaaaagaggatgtcatggaaatattgtggagttgaaaatggggagaaagtcatggttcgtaaaagtgaactattacgaaagtatttgtggctgtaggttt 100  Q
    |||||| |||||| ||| |||||| ||||| |||||||||||| |||||||||||| |||||||||||||||||| || ||||||||||||||||||||     
T  12942623 gaaaaggggatgtaatgaaaatatcgtggaattgaaaatggggggaaagtcatggtacgtaaaagtgaactattatgatagtatttgtggctgtaggttc 12942722  T
Q  101 agtaaaggttggagaaagttcatgaaagaatgcaaagtggagattggagatacttgtctccttaaattgattgatgaacgagaatttgtgtttgatgttt 200  Q
     |||||||||||||| | || ||||||| ||||||||||||||||||||||| ||||||| |||| |||||||||||  ||   ||| ||||||||||||    
T  12942723 ggtaaaggttggagacaatttatgaaagcatgcaaagtggagattggagatatttgtctctttaagttgattgatgagagaatttttttgtttgatgttt 12942822  T
Q  201 caattgcaggaaagaatccattagct 226  Q
    ||||||  ||||||||||||||||||    
T  12942823 caattgttggaaagaatccattagct 12942848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 6 - 253
Target Start/End: Complemental strand, 12922017 - 12921771
Alignment:
Q  6 gaggatgtcatggaaatattgtggagttgaaaatggggagaaagtcatggttcgtaaaagtgaactattacgaaagtatttgtggctgtaggtttagtaa 105  Q
    ||||| |||||| ||||||| ||||||||||| ||||| || ||||||||||||||||||| || |||||||| ||| || |  |||| |||||||||||    
T  12922017 gaggaagtcatgaaaatattttggagttgaaagtggggggacagtcatggttcgtaaaagtcaattattacgagagtgttcggagctgcaggtttagtaa 12921918  T
Q  106 aggttggagaaagttcatgaaagaatgcaaagtggagattggagatacttgtctccttaaattgattgatgaacgagaatttgtgtttgatgtttcaatt 205  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| |||| || ||||||||  || |||||||||||||||||||| ||    
T  12921917 aggttggagaaaattcatgaaagcatgcaaagtggagatcggagatacttgtctctttaagttaattgatgagagaaaatttgtgtttgatgtttcagtt 12921818  T
Q  206 gcaggaaagaatccattagctgtttgttctccaaggtactaataacta 253  Q
      ||| | ||||||||||| ||||||||||  ||||||||||||||||    
T  12921817 atagg-atgaatccattagttgtttgttctttaaggtactaataacta 12921771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 12885544 - 12885313
Alignment:
Q  1 gaaaagaggatgtcatggaaatattgtggagttgaaaatggggagaaagtcatggttcgtaaaagtgaactattacgaaagtatttgtggctgtaggttt 100  Q
    ||||| |||| || ||| |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| || ||| ||  |||||| |||||     
T  12885544 gaaaaaaggaagtaatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaaaagtcaattattatgagagtgttcatggctggaggttc 12885445  T
Q  101 agtaaaggttggagaaagttcatgaaagaatgcaaagtggagattggagatacttgtctccttaaattgattgatgaacgagaatttgtgtttgatgttt 200  Q
    | |||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||| ||||  | || |||||  || ||||||||||||||||||    
T  12885444 aataaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctttaatctaatcgatgagagaaaatttgtgtttgatgttt 12885345  T
Q  201 caattgcaggaaagaatccattagctgtttgtt 233  Q
    |||||  ||| ||||| ||||||| ||||||||    
T  12885344 caattatagg-aagaacccattagttgtttgtt 12885313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 12950281 - 12950485
Alignment:
Q  1 gaaaagaggatgtcatggaaatattgtggagttgaaaatggggagaaagtcatggttcgtaaaagtgaactattacgaaagtatttgtggctgtaggttt 100  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||| || ||||||  |||||| || ||     
T  12950281 gaaaagaggatgtaatgaaaatattgtggagttaaaaatggggagaaagtcatggtttgtaaaagtcaattattatgagagtattcatggctgcagattc 12950380  T
Q  101 agtaaaggttggagaaagttcatgaaagaatgcaaagtggagattggagatacttgtctccttaaattgattgatgaacgagaatttgtgtttgatgttt 200  Q
    ||||| || |||| ||| || ||||||| |||||||||| |||||||||| ||||||||| |||  || ||||||||| |  ||||||||||||||||||    
T  12950381 agtaagggatggacaaaatttatgaaagcatgcaaagtgaagattggagacacttgtctctttaggttaattgatgaaaggaaatttgtgtttgatgttt 12950480  T
Q  201 caatt 205  Q
    |||||    
T  12950481 caatt 12950485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 12992257 - 12992491
Alignment:
Q  1 gaaaagaggatgtcatggaaatattgtggagttgaaaatggggagaaagtcatggttcgtaaaagtgaactattacgaaagtatttgtggctgtaggttt 100  Q
    |||||||||| |||||| |||  || ||||||||||||||||| ||   |||||||  ||||||||||| ||||| || ||||||  ||| | ||| ||     
T  12992257 gaaaagaggaagtcatgaaaactttctggagttgaaaatggggggacgatcatggtctgtaaaagtgaattattatgatagtattcatggttatagattc 12992356  T
Q  101 agtaaaggttggagaaagttcatgaaagaatgcaaagtggagattggagatacttgtctccttaaattgattgatgaacgagaatttgtgtttgatgttt 200  Q
      |  |||||||||| | ||||| ||||||||||||||||||||||||||||||  |||| |||| |||||||||||  |  | ||||||||||||||||    
T  12992357 tctggaggttggagacaattcataaaagaatgcaaagtggagattggagatactcttctctttaagttgattgatgagagcaagtttgtgtttgatgttt 12992456  T
Q  201 caattgcaggaaagaatccattagctgtttgttct 235  Q
    |||||| |||||| ||||| ||||||| |||||||    
T  12992457 caattgtaggaaaaaatcccttagctgcttgttct 12992491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 12921761 - 12921685
Alignment:
Q  289 aaacatctgtatttcattcgaatatatgctgtatcgtgtcagcctttgaactttttccctatggattgtttgtaatg 365  Q
    ||||||||||||||||||||||| || ||| |||||||||||||||||||||||| | |||||||||||||||||||    
T  12921761 aaacatctgtatttcattcgaatctaagctctatcgtgtcagcctttgaacttttgctctatggattgtttgtaatg 12921685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 106 - 230
Target Start/End: Complemental strand, 13001035 - 13000911
Alignment:
Q  106 aggttggagaaagttcatgaaagaatgcaaagtggagattggagatacttgtctccttaaattgattgatgaacgagaatttgtgtttgatgtttcaatt 205  Q
    |||||||||| ||||||| |||||||||||||||||||||    ||||||||||| | || |||||||||||   | ||||||||||| |||||||||||    
T  13001035 aggttggagacagttcataaaagaatgcaaagtggagattctccatacttgtctcttgaagttgattgatgagaaaaaatttgtgtttaatgtttcaatt 13000936  T
Q  206 gcaggaaagaatccattagctgttt 230  Q
    | || |||||| |||||||||||||    
T  13000935 gtagaaaagaacccattagctgttt 13000911  T

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Target: chr1; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 12893833 - 12893674
Alignment:
Q  1 gaaaagaggatgtcatggaaatattgtggagttgaaaatggggagaaagtcatggttcgtaaaagtgaactattacgaaagtatttgtggctgtaggttt 100  Q
    ||||||||||||||||| |||| |||||||||||||||| |||| | | ||||||||| |||||||||| |||||    |||||  |||||||||| ||     
T  12893833 gaaaagaggatgtcatgaaaatcttgtggagttgaaaatagggatacaatcatggttcataaaagtgaattattatcctagtatccgtggctgtagattc 12893734  T
Q  101 agtaaaggttggagaaagttcatgaaagaatgcaaagtggagattggagatacttgtctc 160  Q
     |||||||||||||||| ||  || || | ||||||||| || ||||| |||||||||||    
T  12893733 ggtaaaggttggagaaattttgtggaaaattgcaaagtgaagtttggaaatacttgtctc 12893674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 162
Target Start/End: Original strand, 12997890 - 12998047
Alignment:
Q  4 aagaggatgtcatggaaatattgtggagttgaaaatggggagaaagtcatggttcgtaaaagtgaactattacgaaagtatttgtggctgtaggtttagt 103  Q
    ||||||||||| || |||  |||||||||||||||||||| || | |||||||| ||||||||||  |||||    |||||| |||| |||  ||| |||    
T  12997890 aagaggatgtcgtgaaaaatttgtggagttgaaaatgggg-gacaatcatggtttgtaaaagtgatttattatcctagtattcgtggttgtttgttcagt 12997988  T
Q  104 aaaggttggagaaagttcatgaaagaatgcaaagtggagattggagatacttgtctcct 162  Q
    |||||||||| ||| || ||| ||||| |||||||||| |||||| |||||||||||||    
T  12997989 aaaggttggataaaatttatggaagaaagcaaagtggaaattggaaatacttgtctcct 12998047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 336
Target Start/End: Original strand, 12950574 - 12950640
Alignment:
Q  270 cattgtattctattattgcaaacatctgtatttcattcgaatatatgctgtatcgtgtcagcctttg 336  Q
    ||||||||||||||||||| ||||| ||||||||||| |||| || | ||| ||||||  |||||||    
T  12950574 cattgtattctattattgctaacatttgtatttcatttgaatctaagttgtgtcgtgtgtgcctttg 12950640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14069385 - 14069427
Alignment:
Q  1 gaaaagaggatgtcatggaaatattgtggagttgaaaatgggg 43  Q
    |||||| |||||||||| ||||||||||||||| |||||||||    
T  14069385 gaaaaggggatgtcatgaaaatattgtggagttcaaaatgggg 14069427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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