View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20027_low_14 (Length: 364)

Name: NF20027_low_14
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20027_low_14
NF20027_low_14
[»] chr2 (8 HSPs)
chr2 (206-353)||(25557788-25557936)
chr2 (13-116)||(25558449-25558552)
chr2 (119-208)||(25558086-25558173)
chr2 (206-285)||(4865477-4865555)
chr2 (228-306)||(37828446-37828523)
chr2 (249-306)||(4865682-4865739)
chr2 (249-306)||(29667569-29667626)
chr2 (206-277)||(34887855-34887924)
[»] chr7 (8 HSPs)
chr7 (206-306)||(1505543-1505643)
chr7 (218-306)||(23457411-23457499)
chr7 (218-306)||(23533269-23533357)
chr7 (206-306)||(23474929-23475029)
chr7 (240-306)||(23443335-23443401)
chr7 (249-305)||(2169266-2169322)
chr7 (238-306)||(23534133-23534201)
chr7 (258-307)||(25921030-25921081)
[»] chr5 (5 HSPs)
chr5 (206-306)||(17476169-17476268)
chr5 (228-295)||(7148294-7148360)
chr5 (228-306)||(38299728-38299804)
chr5 (231-306)||(38299874-38299953)
chr5 (260-308)||(41048646-41048694)
[»] chr1 (3 HSPs)
chr1 (218-308)||(27630998-27631088)
chr1 (250-308)||(51249165-51249223)
chr1 (218-306)||(42175252-42175340)
[»] chr3 (4 HSPs)
chr3 (206-307)||(30259605-30259706)
chr3 (249-303)||(30259865-30259919)
chr3 (249-297)||(38421258-38421306)
chr3 (220-276)||(52236576-52236632)
[»] chr6 (4 HSPs)
chr6 (209-305)||(34448430-34448526)
chr6 (206-306)||(1706803-1706903)
chr6 (251-308)||(5449483-5449541)
chr6 (250-307)||(4974690-4974747)
[»] chr4 (4 HSPs)
chr4 (206-285)||(53801506-53801585)
chr4 (206-306)||(12828554-12828655)
chr4 (245-306)||(52074897-52074958)
chr4 (218-285)||(26310235-26310300)
[»] chr8 (4 HSPs)
chr8 (249-306)||(13706217-13706274)
chr8 (219-306)||(1410698-1410783)
chr8 (266-306)||(1410470-1410510)
chr8 (227-306)||(29795754-29795833)


Alignment Details
Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 206 - 353
Target Start/End: Complemental strand, 25557936 - 25557788
Alignment:
Q  206 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacg-ttttttattgggagaagaacaattt 304  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| |||| |||||| ||||||    
T  25557936 gttatacttcatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttgtatgggagtgagcgtttttttgttggaagaagagcaattt 25557837  T
Q  305 tcaatatgagtatatactactcgcattgccatatttgggtcacaggttc 353  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||    
T  25557836 ttaatatgagtatatactactcgcattgccatatttgggtcacaggttc 25557788  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 25558552 - 25558449
Alignment:
Q  13 acctgtgttgtgaaatagggatttaagagttgtgttttgtttttaacaggttgtgtaatgggcttattgggcttagtttaaaacttttactatcagcctt 112  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  25558552 acctgtgttgtgaaatagggatttaggagttgtgttttgtttttaacaggttgtgtaatgggcttattaggcttagtttaaaacttttactaccagcctt 25558453  T
Q  113 acat 116  Q
    ||||    
T  25558452 acat 25558449  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 25558173 - 25558086
Alignment:
Q  119 taattgctaaaatggatataattttgctcttttttcttaattaaaattacctatttgtgttttaggggatttaattacctatttgttgtt 208  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  25558173 taattgctaaaatggatctaattttgctcttttttcttaattaa--ttacctatttgtgttttaggggatttaattacctatttgttgtt 25558086  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 4865555 - 4865477
Alignment:
Q  206 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt 285  Q
    ||||||||| | |||||| || |||||||||| ||||||||| |||||||||| ||||| |||| |||||||||||||||    
T  4865555 gttatacttcagcttaccaaacgtgagttaactcacgtgggg-gtattttggtaagtttgtatgagagtgaacgtttttt 4865477  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 37828523 - 37828446
Alignment:
Q  228 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 306  Q
    |||||||||| |||| | || |||||||||||||||| |||| |||||| |||||||| ||||||||||| ||||||||    
T  37828523 gtgagttaactcacgcgagg-gtattttggtcagtttgtatgtgagtgatcgttttttgttgggagaagagcaattttc 37828446  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 4865682 - 4865739
Alignment:
Q  249 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 306  Q
    |||||||||||||||| ||||||||||||| |||||| ||||||| ||| ||||||||    
T  4865682 gtattttggtcagtttgtatgggagtgaacattttttgttgggaggagagcaattttc 4865739  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 29667626 - 29667569
Alignment:
Q  249 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 306  Q
    ||||||| || ||||| |||||||||||||| ||||||||||| ||||| || |||||    
T  29667626 gtatttttgttagtttgtatgggagtgaacgatttttattgggtgaagagcagttttc 29667569  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 277
Target Start/End: Complemental strand, 34887924 - 34887855
Alignment:
Q  206 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaa 277  Q
    ||||||||| | |||| |||| |||| ||||| |||||||||  ||||||||| ||||| ||||||||||||    
T  34887924 gttatacttcagcttatcgaacgtgaattaactcacgtgggg--tattttggttagtttgtatgggagtgaa 34887855  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 206 - 306
Target Start/End: Complemental strand, 1505643 - 1505543
Alignment:
Q  206 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 305  Q
    ||||||||| | |||| ||||||||||||||| ||| ||| | ||||||||||| |||||||||||||| |||||||||| ||||||||||| |||||||    
T  1505643 gttatacttcagcttatcgaatgtgagttaactcacatggagggtattttggtcggtttatatgggagtaaacgttttttgttgggagaagagcaatttt 1505544  T
Q  306 c 306  Q
    |    
T  1505543 c 1505543  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 218 - 306
Target Start/End: Original strand, 23457411 - 23457499
Alignment:
Q  218 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 306  Q
    |||||| ||||||||||||| |||||||   |||||||||| ||||| ||||||||||| |||||||| || |||||||||||||||||    
T  23457411 cttaccaaatgtgagttaactcacgtggaaggtattttggtaagtttttatgggagtgagcgttttttgtttggagaagaacaattttc 23457499  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 218 - 306
Target Start/End: Complemental strand, 23533357 - 23533269
Alignment:
Q  218 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 306  Q
    |||||| || |||||||||| ||||||| | |||||||||| ||||| ||||||||||| | |||||| ||||||||||||||||||||    
T  23533357 cttaccaaacgtgagttaactcacgtggtgggtattttggtaagtttttatgggagtgagcattttttgttgggagaagaacaattttc 23533269  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 306
Target Start/End: Complemental strand, 23475029 - 23474929
Alignment:
Q  206 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 305  Q
    ||||||||| | |||||| || |||||||||| ||| ||| | |||||||||| | ||| |||||||| || |||||||| |||||||||||||||||||    
T  23475029 gttatacttcaacttaccaaacgtgagttaactcacatggagggtattttggtaaatttttatgggagagagcgttttttgttgggagaagaacaatttt 23474930  T
Q  306 c 306  Q
    |    
T  23474929 c 23474929  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 23443401 - 23443335
Alignment:
Q  240 acgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 306  Q
    |||||| | |||||||| | ||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  23443401 acgtggagggtattttgataagtttttatgggagtgagcgttttttgttgggagaagaacaattttc 23443335  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 2169266 - 2169322
Alignment:
Q  249 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 305  Q
    |||||||| || |||| ||||||||||| |||||||| ||||||||||| |||||||    
T  2169266 gtattttgatcggtttgtatgggagtgagcgttttttgttgggagaagagcaatttt 2169322  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 23534133 - 23534201
Alignment:
Q  238 acacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 306  Q
    |||||||| | ||||||| || ||||| |||| |||||| | |||||| ||||||||||| ||||||||    
T  23534133 acacgtggcgggtatttttgttagtttgtatgagagtgagcattttttgttgggagaagagcaattttc 23534201  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 25921081 - 25921030
Alignment:
Q  258 tcagtttatatgggagtgaacgtt--ttttattgggagaagaacaattttca 307  Q
    ||||||| ||||||||||||||||  |||| ||||| |||||||||||||||    
T  25921081 tcagtttgtatgggagtgaacgttttttttgttgggtgaagaacaattttca 25921030  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 206 - 306
Target Start/End: Original strand, 17476169 - 17476268
Alignment:
Q  206 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 305  Q
    ||||||||||| ||||||||| | |||||||| ||||||| | |||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||    
T  17476169 gttatactttagcttaccgaacgcgagttaactcacgtggag-gtattttggtcagtttgtatgagagcgaacgttttttgttgggagaagaacaatttt 17476267  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 7148360 - 7148294
Alignment:
Q  228 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaa 295  Q
    |||||||||| ||||| |||||||||||||||||||| ||||||||||| | |||||| |||||||||    
T  7148360 gtgagttaactcacgtagggagtattttggtcagtttgtatgggagtgagc-ttttttgttgggagaa 7148294  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 38299804 - 38299728
Alignment:
Q  228 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 306  Q
    |||||||||| |||| ||| |||||||| |||||||| ||||||||||||||| |||| ||||||||||| ||||||||    
T  38299804 gtgagttaactcacgcggg-agtattttagtcagtttgtatgggagtgaacgtctttt-ttgggagaagagcaattttc 38299728  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 38299874 - 38299953
Alignment:
Q  231 agttaacacacgtggggagtattttggtcagttta-----tatgggagtgaacgttttttattgggagaagaacaattttc 306  Q
    ||||||| ||||||||  |||||||||||||||||     |||| |||||| |||||||| ||||||||||| ||||||||    
T  38299874 agttaactcacgtgggc-gtattttggtcagtttaatttgtatgtgagtgagcgttttttgttgggagaagagcaattttc 38299953  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 41048694 - 41048646
Alignment:
Q  260 agtttatatgggagtgaacgttttttattgggagaagaacaattttcaa 308  Q
    ||||| ||||||||||  |||||||| ||||||||||| ||||||||||    
T  41048694 agtttgtatgggagtgtgcgttttttgttgggagaagagcaattttcaa 41048646  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 218 - 308
Target Start/End: Complemental strand, 27631088 - 27630998
Alignment:
Q  218 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttcaa 308  Q
    ||||||||| |||||||||| ||||||||  || |||| |||||||||||||||||||| |||||||| ||||||||||| | ||||||||    
T  27631088 cttaccgaacgtgagttaactcacgtgggatgtgttttagtcagtttatatgggagtgagcgttttttgttgggagaagagctattttcaa 27630998  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 308
Target Start/End: Complemental strand, 51249223 - 51249165
Alignment:
Q  250 tattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttcaa 308  Q
    |||||| ||||||||||||| ||||| |||| |||| ||||||||||| ||||||||||    
T  51249223 tattttagtcagtttatatgagagtgcacgtcttttgttgggagaagagcaattttcaa 51249165  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 306
Target Start/End: Original strand, 42175252 - 42175340
Alignment:
Q  218 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 306  Q
    ||||||||  |||||||||| ||||||| |  ||||| | || |||| |||||||||||  ||||||| ||||||||||| ||||||||    
T  42175252 cttaccgagcgtgagttaactcacgtggaggatatttcgatcggtttgtatgggagtgagtgttttttgttgggagaagagcaattttc 42175340  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 30259706 - 30259605
Alignment:
Q  206 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 305  Q
    ||||||||| |||| |||||| |||||||||| ||||||  |||||||||||||||||| ||||  ||||| |||||||| ||||| ||||  |||||||    
T  30259706 gttatacttcatctgaccgaacgtgagttaactcacgtgacgagtattttggtcagtttgtatgaaagtgatcgttttttgttgggtgaagcgcaatttt 30259607  T
Q  306 ca 307  Q
    ||    
T  30259606 ca 30259605  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 303
Target Start/End: Original strand, 30259865 - 30259919
Alignment:
Q  249 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatt 303  Q
    |||||||| ||||||| ||||||||||| |||||||| ||||||||||| |||||    
T  30259865 gtattttgatcagtttgtatgggagtgagcgttttttgttgggagaagagcaatt 30259919  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 38421306 - 38421258
Alignment:
Q  249 gtattttggtcagtttatatgggagtgaacgttttttattgggagaaga 297  Q
    |||||||| ||||||||||||||||| | |||||||| | |||||||||    
T  38421306 gtattttgatcagtttatatgggagtaagcgttttttgtcgggagaaga 38421258  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 52236576 - 52236632
Alignment:
Q  220 taccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtga 276  Q
    |||||||||||||||||| ||  | | ||||||||||||||||| || |||||||||    
T  52236576 taccgaatgtgagttaactcaaattgagagtattttggtcagttcatgtgggagtga 52236632  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 34448430 - 34448526
Alignment:
Q  209 atactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 305  Q
    |||||| | |||||| || ||||| |||||||||||||| |||||||||||||||| |||||| ||||  ||||||| || |||||||| |||||||    
T  34448430 atacttcagcttaccaaacgtgagctaacacacgtggggggtattttggtcagtttgtatgggcgtgagtgttttttgtttggagaagagcaatttt 34448526  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 306
Target Start/End: Original strand, 1706803 - 1706903
Alignment:
Q  206 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 305  Q
    ||||||||| | |||||||||  ||||||||| ||||||| | ||| |||| |||||||||||| |||||||  |||||| ||||||||||| || ||||    
T  1706803 gttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgagagtgaatcttttttgttgggagaagagcagtttt 1706902  T
Q  306 c 306  Q
    |    
T  1706903 c 1706903  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 5449541 - 5449483
Alignment:
Q  251 attttggtcagtttatatgggagtgaacg-ttttttattgggagaagaacaattttcaa 308  Q
    |||||||||||||| |||||||||||||| |||||| || |||||||| ||||||||||    
T  5449541 attttggtcagtttgtatgggagtgaacgcttttttgtttggagaagagcaattttcaa 5449483  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 4974747 - 4974690
Alignment:
Q  250 tattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttca 307  Q
    ||||||||||||||| ||||| ||||| |||||||| ||  ||||||| |||||||||    
T  4974747 tattttggtcagtttgtatggaagtgagcgttttttgttaagagaagagcaattttca 4974690  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 53801506 - 53801585
Alignment:
Q  206 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt 285  Q
    ||||||||| | |||| |||| |||||||||| ||||||| |||||||||||||||||| | || |||||||||||||||    
T  53801506 gttatacttcagcttatcgaacgtgagttaactcacgtggagagtattttggtcagtttgtttgagagtgaacgtttttt 53801585  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 206 - 306
Target Start/End: Original strand, 12828554 - 12828655
Alignment:
Q  206 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt-attgggagaagaacaattt 304  Q
    ||||||||| ||||||||||| |||||||||| |||||| |   ||||||||||||||| |||| |||||||| ||||||  |||||||||||  |||||    
T  12828554 gttatacttcatcttaccgaacgtgagttaactcacgtgagagatattttggtcagtttgtatgagagtgaacattttttggttgggagaagagaaattt 12828653  T
Q  305 tc 306  Q
    ||    
T  12828654 tc 12828655  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 52074897 - 52074958
Alignment:
Q  245 gggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 306  Q
    ||||||||||||||| || ||||||| ||||| ||||||||| || ||||||| ||||||||    
T  52074897 gggagtattttggtcggtctatatggaagtgagcgttttttactgagagaagagcaattttc 52074958  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 26310300 - 26310235
Alignment:
Q  218 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt 285  Q
    ||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||||| | ||||||    
T  26310300 cttactgaatgtgagttaattca--tgcggagtattttggtcagtttgtatgggagtgagcatttttt 26310235  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 13706217 - 13706274
Alignment:
Q  249 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 306  Q
    |||||||||| ||||| ||||||||||||||||||||| ||| |||||| ||||||||    
T  13706217 gtattttggttagtttgtatgggagtgaacgttttttaatggtagaagagcaattttc 13706274  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 306
Target Start/End: Original strand, 1410698 - 1410783
Alignment:
Q  219 ttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 306  Q
    ||||||||  ||||||||| ||||||| | |||||||| | ||||||||||| |||||  ||||||| ||||||||||| ||||||||    
T  1410698 ttaccgaacatgagttaactcacgtggag-gtattttgattagtttatatggcagtgagtgtttttt-ttgggagaagagcaattttc 1410783  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 1410510 - 1410470
Alignment:
Q  266 tatgggagtgaacgttttttattgggagaagaacaattttc 306  Q
    ||||| |||||||||||||| |||| |||||||||||||||    
T  1410510 tatggaagtgaacgttttttgttggaagaagaacaattttc 1410470  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 29795833 - 29795754
Alignment:
Q  227 tgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacg-ttttttattgggagaagaacaattttc 306  Q
    ||||||||||| |||| || | |||||||||||||||| |||| |||| |||| |||||| ||| ||||||| ||||||||    
T  29795833 tgtgagttaactcacgcggag-gtattttggtcagtttgtatgagagtaaacgtttttttgttgagagaagagcaattttc 29795754  T

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