View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20027_low_16 (Length: 348)
Name: NF20027_low_16
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 29796075 - 29796404
Alignment:
| Q |
16 |
catgtttagaaatattttgtccattcttatag-tccataattatatatagttttataattttccaaccttatttgccgttatcaaacttcaaatctcaat |
114 |
Q |
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| T |
29796075 |
catgtttagaaatattttgtccattcttataggtccataattatatatagttttataattttccaaccttatttgccgttatcaaacttcaaatctcaat |
29796174 |
T |
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| Q |
115 |
ccattgttcattatctaagatcgaatagttacagttctgtaatgcatgcttaatgatgttgcttaggaacaataagattgaactaaaatactttgaaaag |
214 |
Q |
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| T |
29796175 |
ccattgttcaatatctaagatcgaatagttacagttctataatgcatgcttaatggtgttgcttaggaacaataagattgaactaaaatactttgaaaag |
29796274 |
T |
|
| Q |
215 |
caataacaaaagagataattgggattgtgtaaaatatccagttagtct-------------taaataccttatagtaaagtgtcgtcaaattcatttctc |
301 |
Q |
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| T |
29796275 |
caataacaaaagag---attgggattgtgtaaaatatccagttagtctttaataccatcactaaatcccttatagtaaagtgtcgtcaaattcatttctc |
29796371 |
T |
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| Q |
302 |
tcatcattttcttcatattaccttgttcttctt |
334 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
29796372 |
tcatcattttcttcatattaccttgttcttctt |
29796404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 67 - 334
Target Start/End: Original strand, 26623466 - 26623732
Alignment:
| Q |
67 |
ttataattttccaaccttatttgccgttatcaaacttcaaatctcaatccattgttcattatctaagatcgaatagttacagttctgtaatgcatgctta |
166 |
Q |
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| T |
26623466 |
ttatgattatccaaccctatttgccgttatgaaacttca---ct-agtccatccttcaatatcaaagattgaataattacaattctataatgcatactta |
26623561 |
T |
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| Q |
167 |
atgatgttgcttaggaacaataagattgaactaaaatactttgaaaagcaataac-aaaagagataattg-ggattgtgtaaaatatccagttagtc-tt |
263 |
Q |
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| T |
26623562 |
aaagtgttgcgtaggaacagtaaggttgaattaaaatactttgaaaccccataacaaaaagagataattgtcgattgtgtaaaatatagcattggtcgtt |
26623661 |
T |
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| Q |
264 |
aaataccttatagtaaagtgtcgtcaaattcatttctctcatcattttcttcatattaccttgttcttctt |
334 |
Q |
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|||| || ||| || || | |||||||| |||||||||||||||||| |||||||| ||||||| |||| |
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| T |
26623662 |
aaatcccatatcgtcaacctttgtcaaatttatttctctcatcattttcatcatattatcttgttcatctt |
26623732 |
T |
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