View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20027_low_17 (Length: 334)

Name: NF20027_low_17
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20027_low_17
NF20027_low_17
[»] chr5 (4 HSPs)
chr5 (10-289)||(18137492-18137772)
chr5 (25-176)||(18104529-18104680)
chr5 (197-250)||(18104448-18104501)
chr5 (79-115)||(4691602-4691638)
[»] chr4 (5 HSPs)
chr4 (210-275)||(19056712-19056777)
chr4 (63-109)||(48994145-48994191)
chr4 (62-115)||(3001004-3001057)
chr4 (63-144)||(48994534-48994614)
chr4 (186-238)||(42526525-42526577)
[»] chr7 (6 HSPs)
chr7 (194-273)||(24955301-24955380)
chr7 (211-269)||(43448944-43449002)
chr7 (71-155)||(43449120-43449204)
chr7 (73-109)||(6098743-6098779)
chr7 (69-109)||(18891805-18891845)
chr7 (71-103)||(27902128-27902160)
[»] chr3 (3 HSPs)
chr3 (65-150)||(32933367-32933452)
chr3 (64-113)||(35201771-35201820)
chr3 (192-245)||(41538754-41538807)
[»] chr2 (3 HSPs)
chr2 (194-267)||(35112398-35112469)
chr2 (73-105)||(13348775-13348807)
chr2 (61-108)||(31708312-31708359)
[»] chr6 (1 HSPs)
chr6 (207-266)||(32939664-32939723)
[»] chr1 (4 HSPs)
chr1 (71-109)||(33890517-33890555)
chr1 (71-109)||(33953695-33953733)
chr1 (207-275)||(630016-630084)
chr1 (69-105)||(17633318-17633354)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 18137772 - 18137492
Alignment:
Q  10 acatcatcaactacgtgctcaacacaaaccatatattttgcaaaagaaaacattctccttcatttttcatgtattaaatatgacttttggagtcatacat 109  Q
    |||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  18137772 acatcaccaactacatgctcaacacaaaccatatatcttgcaaaagaaaacattttccttcatttttcatctattaaatatgacttttggagtcatacat 18137673  T
Q  110 atcatgcataaaataaatatttatatgttagaaattcaaagcgattgtaaaatctaacatctattac-nnnnnnnnnaataatcacataaaattttacaa 208  Q
     ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          |||||||||||||||||||||||    
T  18137672 gtcatgcacaaaataaatatttatatgttagaaattcaaagcaattgtaaaatctaacatctattacttctttttttaataatcacataaaattttacaa 18137573  T
Q  209 tgttctattattgtatgaacaaattataaattacattaattaccactttaaacttaaacaagaaacaacatcaacattaac 289  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  18137572 tgttctattattttatgaacaaattataaattacattaattaccactttaaacttaaacaagaaacatcatcaacgttaac 18137492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 18104680 - 18104529
Alignment:
Q  25 tgctcaacacaaaccatatattttgcaaaagaaaacattctccttcatttttcatgtattaaatatgacttttggagtcatacatatcatgcataaaata 124  Q
    |||||||||||||| ||| || |||||||||| ||||||||||| |||| |||||||| ||||||||||| |||||||||||||| ||||| | | ||||    
T  18104680 tgctcaacacaaacaatacatcttgcaaaagagaacattctcctccattcttcatgtactaaatatgactcttggagtcatacatgtcatgtacagaata 18104581  T
Q  125 aatatttatatgttagaaattcaaagcgattgtaaaatctaacatctattac 176  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  18104580 aatatttatatgttagaaattcaaaatgattgtaaaatctaacatctattac 18104529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 18104501 - 18104448
Alignment:
Q  197 aaaattttacaatgttctattattgtatgaacaaattataaattacattaatta 250  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  18104501 aaaattttacaatgttatattattttatgaacaaattataaattacatcaatta 18104448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 4691638 - 4691602
Alignment:
Q  79 tgtattaaatatgacttttggagtcatacatatcatg 115  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  4691638 tgtattaaatatgacttttagagtcatgcatatcatg 4691602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 19056777 - 19056712
Alignment:
Q  210 gttctattattgtatgaacaaattataaattacattaattaccactttaaacttaaacaagaaaca 275  Q
    ||||||||||| ||||||||||||||||||||||| |||||| |||||||| ||| ||||| ||||    
T  19056777 gttctattattttatgaacaaattataaattacatcaattactactttaaaattagacaaggaaca 19056712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 48994191 - 48994145
Alignment:
Q  63 tctccttcatttttcatgtattaaatatgacttttggagtcatacat 109  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||    
T  48994191 tctccttcatttttcatgtattaaatatgactttttgagtcacacat 48994145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 3001004 - 3001057
Alignment:
Q  62 ttctccttcatttttcatgtattaaatatgacttttggagtcatacatatcatg 115  Q
    |||||| | |||||| |||||||||||||||||||||||||||||||| |||||    
T  3001004 ttctccctaattttttatgtattaaatatgacttttggagtcatacatctcatg 3001057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 48994614 - 48994534
Alignment:
Q  63 tctccttcatttttcatgtattaaatatgacttttggagtcatacatatcatgcat-aaaataaatatt-tatatgttagaaat 144  Q
    ||||||||| ||||||||||||||||||||||||| || ||| ||||||||  ||| |||||||||||| ||||| ||||||||    
T  48994614 tctccttcaattttcatgtattaaatatgactttt-gaatcacacatatca--catgaaaataaatattatatatattagaaat 48994534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 42526577 - 42526525
Alignment:
Q  186 aataatcacataaaattttacaatgttctattattgtatgaacaaattataaa 238  Q
    ||||||| ||||||| |||| |||||| ||||||| |||| ||||||||||||    
T  42526577 aataatcgcataaaaatttataatgttatattattttatggacaaattataaa 42526525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 273
Target Start/End: Complemental strand, 24955380 - 24955301
Alignment:
Q  194 cataaaattttacaatgttctattattgtatgaacaaattataaattacattaattaccactttaaacttaaacaagaaa 273  Q
    ||||||||||| |||||||||||||||  || || |||||||||||||||||| ||| |||| | || ||||||||||||    
T  24955380 cataaaattttgcaatgttctattatttcattaaaaaattataaattacattagttatcactatgaaattaaacaagaaa 24955301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 43449002 - 43448944
Alignment:
Q  211 ttctattattgtatgaacaaattataaattacattaattaccactttaaacttaaacaa 269  Q
    |||||||||| ||| || ||||||||||||| || | ||||||||||||| ||||||||    
T  43449002 ttctattattttattaataaattataaattatatcagttaccactttaaaattaaacaa 43448944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 43449204 - 43449120
Alignment:
Q  71 atttttcatgtattaaatatgacttttggagtcatacatatcatgcataaaataaatatt-tatatgttagaaattcaaagcgatt 155  Q
    ||||||||| |||||||||||||||||    |||| ||||||||| | | | |||||||| |||||||||||||| ||||||||||    
T  43449204 atttttcatatattaaatatgacttttttgatcatgcatatcatg-agatattaaatattatatatgttagaaatacaaagcgatt 43449120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 6098743 - 6098779
Alignment:
Q  73 ttttcatgtattaaatatgacttttggagtcatacat 109  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  6098743 ttttcatgtattaaatatgatttttgaagtcatacat 6098779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 18891845 - 18891805
Alignment:
Q  69 tcatttttcatgtattaaatatgacttttggagtcatacat 109  Q
    ||||| |||||||||||||||||||| || |||||||||||    
T  18891845 tcattgttcatgtattaaatatgactctttgagtcatacat 18891805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 27902128 - 27902160
Alignment:
Q  71 atttttcatgtattaaatatgacttttggagtc 103  Q
    |||||||||||||||||||||| ||||||||||    
T  27902128 atttttcatgtattaaatatgatttttggagtc 27902160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 32933367 - 32933452
Alignment:
Q  65 tccttcatttttcatgtattaaatatgacttttggagtcatacatatcatgcataaaataaatatt-tatatgttagaaattcaaag 150  Q
    ||||||||||||||| |||||||||||| ||||  |||||| |||||||||   |||||||||||| |||||||||||||| |||||    
T  32933367 tccttcatttttcatatattaaatatgagtttttaagtcatgcatatcatg-tgaaaataaatattatatatgttagaaatacaaag 32933452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 35201820 - 35201771
Alignment:
Q  64 ctccttcatttttcatgtattaaatatgacttttggagtcatacatatca 113  Q
    |||| ||||| |||||||||||||||||| ||||| ||||||| ||||||    
T  35201820 ctccctcattattcatgtattaaatatgatttttgaagtcataaatatca 35201771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 41538754 - 41538807
Alignment:
Q  192 cacataaaattttacaatgttctattattgtatgaacaaattataaattacatt 245  Q
    |||||||||||||  ||  |||||||||| |||||| |||||||||||||||||    
T  41538754 cacataaaattttgtaacattctattattttatgaaaaaattataaattacatt 41538807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 35112469 - 35112398
Alignment:
Q  194 cataaaattttacaatgttctattattgtatgaacaaattataaattacattaattaccactttaaacttaaac 267  Q
    ||||||||||| |||  |||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||    
T  35112469 cataaaatttt-caacattctattattttatgaacaaattataaattaca-tcattaccactttaaaattaaac 35112398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 13348807 - 13348775
Alignment:
Q  73 ttttcatgtattaaatatgacttttggagtcat 105  Q
    |||||||||||||||||||||||||||||||||    
T  13348807 ttttcatgtattaaatatgacttttggagtcat 13348775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 31708312 - 31708359
Alignment:
Q  61 attctccttcatttttcatgtattaaatatgacttttggagtcataca 108  Q
    |||||||||||| | |||| ||||||||||||||||| ||||||||||    
T  31708312 attctccttcatctatcatatattaaatatgactttttgagtcataca 31708359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 266
Target Start/End: Complemental strand, 32939723 - 32939664
Alignment:
Q  207 aatgttctattattgtatgaacaaattataaattacattaattaccactttaaacttaaa 266  Q
    |||||||||||||| |||  |||||||||||||||||||| ||| |||||| || |||||    
T  32939723 aatgttctattattttatagacaaattataaattacattagttatcactttgaatttaaa 32939664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 33890555 - 33890517
Alignment:
Q  71 atttttcatgtattaaatatgacttttggagtcatacat 109  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  33890555 atttttcatgtattaaatatgtattttggagtcatacat 33890517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 33953695 - 33953733
Alignment:
Q  71 atttttcatgtattaaatatgacttttggagtcatacat 109  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  33953695 atttttcatgtattaaatatgtattttggagtcatacat 33953733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 630084 - 630016
Alignment:
Q  207 aatgttctattattgtatgaacaaattataaattacattaattaccactttaaacttaaacaagaaaca 275  Q
    |||||| ||||||| |||||| |||||||||||||||| | || ||||||| || ||| || |||||||    
T  630084 aatgttttattattttatgaaaaaattataaattacatcatttgccactttgaaattagacgagaaaca 630016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 17633318 - 17633354
Alignment:
Q  69 tcatttttcatgtattaaatatgacttttggagtcat 105  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  17633318 tcattttgcatgtattaaatattacttttggagtcat 17633354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University