View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20027_low_2 (Length: 599)
Name: NF20027_low_2
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 8066714 - 8067136
Alignment:
| Q |
1 |
catgacactgtgaacacaaccggcttttgcttctggaattcgaagagccgagacaagctcgggaagagtaataggtttgccatgattttgaattatatct |
100 |
Q |
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| T |
8066714 |
catgacactatgaacacaaccggcttttgcttctggaattcgaagagccgagacaagctcaggaagagtgataggtttgccatgattttggattatatct |
8066813 |
T |
|
| Q |
101 |
ggtatgccaagttcaacagcccacttgatcgacacgggtctcatgaaactgaatatctgattgtacaagtgagcttgagctacaaagagctcacttgctt |
200 |
Q |
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| T |
8066814 |
ggtatgccaagttcaacagcccacttgatcgacacgggtctcatgaaactgaatatctgattgtacaggtgagcttgagctacaaagagctcacttgctt |
8066913 |
T |
|
| Q |
201 |
tgtactcattctcagaatccatgaatgaattaatattattgaatcaaataaatttttgttattatttaaatttgtttatatacattaacttagttttcta |
300 |
Q |
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| T |
8066914 |
tgtactcattctcagaatccatgaatg-attaatattattgaatcaaatgaattcttgtgattatgtgaatttgtttatatacattaatttagttttcta |
8067012 |
T |
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| Q |
301 |
tgctttaaataggcaccaattgtactatacacgccaataaattaatgtttgaatttttcctttcattaattattatagtttaatttgttgatgacaccca |
400 |
Q |
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| T |
8067013 |
tgctttatataagcaccaaatgtaccatacacgccaataaattaatgtttgaatttttcctttcattaattattatagtttaatttgttgatggcaccca |
8067112 |
T |
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| Q |
401 |
ctttaatttggtaataggcacacaaagt |
428 |
Q |
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| T |
8067113 |
ct----tttggtaataggcacacaaagt |
8067136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 8075149 - 8075483
Alignment:
| Q |
1 |
catgacactgtgaacacaaccggcttttgcttctggaattcgaagagccgagacaagctcgggaagagtaataggtttgccatgattttgaattatatct |
100 |
Q |
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| T |
8075149 |
catgacactgtgaacacaaccggcttttgcttctggaattcgaagagccgagacaagctcgggaagagtaataggtttgccatgattttgaattatatct |
8075248 |
T |
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| Q |
101 |
ggtatgccaagttcaacagcccacttgatcgacacgggtctcatgaaactgaatatctgattgtacaagtgagcttgagctacaaagagctcacttgctt |
200 |
Q |
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| T |
8075249 |
ggtatgccaagttcaacagcccacttgatcgacacgggtctcaagaaactaaataactgattgtacaagtgagcttgaacttcaaagagttcacttgctt |
8075348 |
T |
|
| Q |
201 |
tgtactcattctcagaatccatgaatgaattaatattattgaatcaaataaatttttgttattatttaaatttgtttatatacattaacttagttttcta |
300 |
Q |
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| T |
8075349 |
tgtgctcattctcagaacccatgaatg-------attattgaatcaattgagttcttgtgattatgtgaatgtgttgatatacattaacttagtttgcaa |
8075441 |
T |
|
| Q |
301 |
tgctttaaataggcaccaattgtactatacacgccaataaatt |
343 |
Q |
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| T |
8075442 |
tgctttatataggcaccta-cgtactatacacgccaataaatt |
8075483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 433 - 507
Target Start/End: Original strand, 8067187 - 8067261
Alignment:
| Q |
433 |
aatgttttaatatagcagaagtccatacacgcatatggtggaaaatgtcaatatgttgataaatgatcaacttaa |
507 |
Q |
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| T |
8067187 |
aatgttttaatatagcagaagtccatacacgcatatggtggaaaatgtcaatatgttgataaatgatcaacttaa |
8067261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 337 - 428
Target Start/End: Original strand, 8077722 - 8077809
Alignment:
| Q |
337 |
ataaattaatgtttgaatttttcctttcattaattattatagtttaatttgttgatgacacccactttaatttggtaataggcacacaaagt |
428 |
Q |
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| T |
8077722 |
ataaattattgtttgactttgtcctttcattgattatcatagtttaatttgttgatgacacccact----tttggtaataggcacacaaagt |
8077809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 477
Target Start/End: Original strand, 8077864 - 8077908
Alignment:
| Q |
433 |
aatgttttaatatagcagaagtccatacacgcatatggtggaaaa |
477 |
Q |
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| T |
8077864 |
aatgtttgaatatagcataagtccatacacgcatatggtggaaaa |
8077908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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