View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20027_low_20 (Length: 302)
Name: NF20027_low_20
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 40285636 - 40285391
Alignment:
| Q |
1 |
ttgttaaaagattcaggcacaacctgagacagtggagaaagtgagcaaaattgtgaggaaacaacttgctttgactcctgaaaccaagcttaccccagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40285636 |
ttgttaaaagattcaggcacaacctgagacagtggagaaagtgagcaaaattgtgaggaaacaacttgctttgactcctgaaaccaagcttaccccagaa |
40285537 |
T |
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| Q |
101 |
accaagttttcagaacttggtgctgattctcttgacactgtaagaaactcaattgtaatcaatcaaacattgccagttttgattatttattacttttnnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40285536 |
accaagttttcagaacttggtgctgattctcttgacactgtaagaaattcaattgtaatcaatcaaacattgttagttttgattatttattacttttaaa |
40285437 |
T |
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| Q |
201 |
nnnnntattgagctccgttggttataaaggtcaagttcttctcact |
246 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||| |
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| T |
40285436 |
aaaaatattgaactccgttggttataaaggtcaagttcttatcact |
40285391 |
T |
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