View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20027_low_24 (Length: 285)
Name: NF20027_low_24
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_low_24 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 35669328 - 35669612
Alignment:
| Q |
1 |
atcaaaacatgcaatgcgagacaacaccatctttctaaaatagttatggaaagaaacgttaccagtcaacgaactgaacagtcctctttgttttgatggt |
100 |
Q |
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|||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35669328 |
atcagaacatgcaatgcaagacaacaccatttttctaaaatagttatggaaagaaacgttaccagtcaacgaactgaacagtcctctttgttttgatggt |
35669427 |
T |
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| Q |
101 |
gccaacagcagcattgacatcctttggaacaacatcaccacggtacatcaaacagcaagccatatatttcccatgccttggatcacacttagccatcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35669428 |
gccaacagcagcattgacatcctttggaacaacatcaccacggtacatcaaacagcaagccatatatttcccatgccttggatcacacttagccatcata |
35669527 |
T |
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| Q |
201 |
ctagcaggctcaaacacagcattggtaatttcaggcacagatagctgctcatggtaagccttagcagcagagataacaggtgcat |
285 |
Q |
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| T |
35669528 |
ctagcaggctcaaacacagcattggtaatttcaggcacagatagctgctcatggtaagccttagcagcagagataacaggtgcat |
35669612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 61 - 285
Target Start/End: Original strand, 51751752 - 51751976
Alignment:
| Q |
61 |
accagtcaacgaactgaacagtcctctttgttttgatggtgccaacagcagcattgacatcctttggaacaacatcaccacggtacatcaaacagcaagc |
160 |
Q |
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|||| ||||| ||||||| |||||||| || |||||||| ||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||| |
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| T |
51751752 |
accaatcaacaaactgaatggtcctcttggtcttgatggttgcaacagcagcattcacatccttaggtacaacatcaccacggtacatcaaacaacaagc |
51751851 |
T |
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| Q |
161 |
catatatttcccatgccttggatcacacttagccatcatactagcaggctcaaacacagcattggtaatttcaggcacagatagctgctcatggtaagcc |
260 |
Q |
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| T |
51751852 |
catgtattttccatggcgagggtcacacttagccatcatggaagaaggttcaaaagcactgttggtgatctcagcaacagaaagctgctcatggtaagcc |
51751951 |
T |
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| Q |
261 |
ttagcagcagagataacaggtgcat |
285 |
Q |
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| T |
51751952 |
ttctcagcagagataacaggtgcat |
51751976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 72 - 277
Target Start/End: Complemental strand, 28713749 - 28713544
Alignment:
| Q |
72 |
aactgaacagtcctctttgttttgatggtgccaacagcagcattgacatcctttggaacaacatcaccacggtacatcaaacagcaagccatatatttcc |
171 |
Q |
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| T |
28713749 |
aactgaatggtcctcttggttctgattgtcgcgacagcagcattcacatccttgggaacaacatcaccacggtacatcaaacagcaagccatgtactttc |
28713650 |
T |
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| Q |
172 |
catgccttggatcacacttagccatcatactagcaggctcaaacacagcattggtaatttcaggcacagatagctgctcatggtaagccttagcagcaga |
271 |
Q |
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| T |
28713649 |
catggcgagggtcacacttaaccatcatagatgatggctcaaaagcactgttagtaatttcagcaactgaaagctgctcatgataagccttctcagcaga |
28713550 |
T |
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| Q |
272 |
gataac |
277 |
Q |
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|||||| |
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| T |
28713549 |
gataac |
28713544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 72 - 277
Target Start/End: Original strand, 47927893 - 47928098
Alignment:
| Q |
72 |
aactgaacagtcctctttgttttgatggtgccaacagcagcattgacatcctttggaacaacatcaccacggtacatcaaacagcaagccatatatttcc |
171 |
Q |
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||||||| |||||||| |||||||| || | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || || | |
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| T |
47927893 |
aactgaatggtcctcttggttttgattgtagcgacagcagcattcacatccttgggaacaacatcaccacggtacatcaaacagcaagccatgtactttc |
47927992 |
T |
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| Q |
172 |
catgccttggatcacacttagccatcatactagcaggctcaaacacagcattggtaatttcaggcacagatagctgctcatggtaagccttagcagcaga |
271 |
Q |
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|||| | || |||||||||||||||||| | |||||||| || ||||||||||||| || || ||||||||||| |||||||| ||||||| |
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| T |
47927993 |
catggcgagggtcacacttagccatcatagatgatggctcaaaagcactgttggtaatttcagcaactgaaagctgctcatgataagccttctcagcaga |
47928092 |
T |
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| Q |
272 |
gataac |
277 |
Q |
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|||||| |
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| T |
47928093 |
gataac |
47928098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 267
Target Start/End: Complemental strand, 33270690 - 33270482
Alignment:
| Q |
59 |
ttaccagtcaacgaactgaacagtcctctttgttttgatggtgccaacagcagcattgacatcctttggaacaacatcaccacggtacatcaaacagcaa |
158 |
Q |
| |
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|||||||||||| |||||||| || |||||||||||||| | |||||| ||||| ||||| || || |||||||| || || ||||| | ||||| |
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| T |
33270690 |
ttaccagtcaacaaactgaactgttctctttgttttgatatttgaaacagctgcatttacatctttaggcacaacatctccgcgatacatgaggcagcat |
33270591 |
T |
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| Q |
159 |
gccatatatttcccatgccttggatcacacttagccatcatactagcaggctcaaacacagcattggtaatttcaggcacagatagctgctcatggtaag |
258 |
Q |
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| T |
33270590 |
gccatgtactttccgtgtctagggtcacacttagccatcatacttgacggctcaaaaactgcattggtgatctcaggaactgatatctgctcatggtagg |
33270491 |
T |
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| Q |
259 |
ccttagcag |
267 |
Q |
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|||| |||| |
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| T |
33270490 |
cctttgcag |
33270482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 10031962 - 10032078
Alignment:
| Q |
104 |
aacagcagcattgacatcctttggaacaacatcaccacggtacatcaaacagcaagccatatatttcccatgccttggatcacacttagccatcatacta |
203 |
Q |
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||||||| |||||||||| || ||||||| ||| || || |||||||| || || ||||| || || ||||| ||||||||||||||| |||||||||| |
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| T |
10031962 |
aacagcaacattgacatctttcggaacaatatcgccgcgatacatcaagcaacatgccatgtactttccatgtcttggatcacacttaaccatcatactc |
10032061 |
T |
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| Q |
204 |
gcaggctcaaacacagc |
220 |
Q |
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| T |
10032062 |
gacggctcaaacacagc |
10032078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 27884847 - 27884779
Alignment:
| Q |
82 |
tcctctttgttttgatggtgccaacagcagcattgacatcctttggaacaacatcaccacggtacatca |
150 |
Q |
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| T |
27884847 |
tcctctttgtttgaatggtggcaacaacagcattcacgtctttgggaacaacatcagcacggtacatca |
27884779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 40377227 - 40377324
Alignment:
| Q |
103 |
caacagcagcattgacatcctttggaacaacatcaccacggtacatcaaacagcaagccatatatttcccatgccttggatcacacttagccatcata |
200 |
Q |
| |
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||||||| ||||| ||||| || || ||||||||||| | |||||| | ||| |||||||| || || ||||| | |||||||||||| ||||||||| |
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| T |
40377227 |
caacagctgcattaacatctttaggcacaacatcacctctgtacataagacaacaagccatgtacttgccatggcgtggatcacacttggccatcata |
40377324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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